| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775097
Identifier: 119775097
GI number: 119775097
Start: 2390319
End: 2391248
Strand: Reverse
Name: 119775097
Synonym: Sama_1962
Alternate gene names: NA
Gene position: 2391248-2390319 (Counterclockwise)
Preceding gene: 119775098
Following gene: 119775096
Centisome position: 55.53
GC content: 49.14
Gene sequence:
>930_bases ATGTTTTTTGAAGGTTCAGAAAAAAAAATAGAAGTCATAGTCACCCGCGAATTCGGCTCACTCAGAGCACTGGGGCGTGA ATTCTGGAAAGAGATGGTGGCCTGCGCCAATGCGGAAATCCTCTCCAGTATCAACAATGAACACTGCGATGCCTACTTGC TCAGCGAATCGAGTTTGTTTGTCTGGGACGACAGGTTCCTGATGTTGACCTGCGGCACCACAACCCTCGCTAAAGCCGTT GTCCGTTTTATCAATGAAGTCGGTGCTGAAAAGATTGCTTTTGCCAGCTATCAGCGCAAAAACGAGTATCTGTCACACTT GCAAAGCAGTGCCTTTACCGACGATTTAACCGCCATCCGCGCGTTGTTGCCGGGGGATGCATTCAGAATCGGACATCTGG ATTCCCACCATCACTATATTTTCACCAGCAACAAACCTTACGAAGCAACTGCAGATGACCATACCAGTGAGCTTTTGATG TACCACATCCGTGGTGAGGCTGCCGATTACTTGCGCAGTGAACATCAGAGTGCTGCTGAAATCCGCCGCCTGTTGCAATT GGATGCCATGTTACCCGGGTTTGTATTTGACGACTTTTTGTTTGAACCTTTTGGGTATTCTATCAATGGCATCCGTGGCG ATCGCTACATGACCATTCATATTACGCCCCAGGAAAACAGCTCCTACGTGAGCTTTGAAACCAACTTGCCGCTGGAAGGC GAATATCGTCAAATCTTCTCTCGTTTGCTGGGTATTCTAAATCCGGGCAGTTGGGATGAGATTGGGTTTAACGCCCAGCG TCATACCGAAAACTACCCCGCGCACCTGTGCCTGGGAAGCTGTGCCTTATCCATGTCCCAGGGGTATAGGGTGGAGTTCA GCCACTATCAGCAGTTGTGTCATGAAGTGCTTATTCCCGAGCCCATGTAA
Upstream 100 bases:
>100_bases GGCTACACCTATCTGGAAGACTTTTAACCCATACTAAGGCAAGGTGAAGCCAGGCCGGGGAACCAGGGCGTAAGCCCTCC CGGCCCTCAGGTAGAGAAAA
Downstream 100 bases:
>100_bases TCTTCGCCCCGCCAGACGTTATCCCCTTTGCGCCTGAGGTCTCTGGCTATACGCAGAGAATTGTGTTGATTACTCCGTGT AATCAGCGGATACCGAAGCC
Product: adenosylmethionine decarboxylase
Products: NA
Alternate protein names: S-Adenosylmethionine Decarboxylase; S-Adenosylmethionine Decarboxylase Pro
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MFFEGSEKKIEVIVTREFGSLRALGREFWKEMVACANAEILSSINNEHCDAYLLSESSLFVWDDRFLMLTCGTTTLAKAV VRFINEVGAEKIAFASYQRKNEYLSHLQSSAFTDDLTAIRALLPGDAFRIGHLDSHHHYIFTSNKPYEATADDHTSELLM YHIRGEAADYLRSEHQSAAEIRRLLQLDAMLPGFVFDDFLFEPFGYSINGIRGDRYMTIHITPQENSSYVSFETNLPLEG EYRQIFSRLLGILNPGSWDEIGFNAQRHTENYPAHLCLGSCALSMSQGYRVEFSHYQQLCHEVLIPEPM
Sequences:
>Translated_309_residues MFFEGSEKKIEVIVTREFGSLRALGREFWKEMVACANAEILSSINNEHCDAYLLSESSLFVWDDRFLMLTCGTTTLAKAV VRFINEVGAEKIAFASYQRKNEYLSHLQSSAFTDDLTAIRALLPGDAFRIGHLDSHHHYIFTSNKPYEATADDHTSELLM YHIRGEAADYLRSEHQSAAEIRRLLQLDAMLPGFVFDDFLFEPFGYSINGIRGDRYMTIHITPQENSSYVSFETNLPLEG EYRQIFSRLLGILNPGSWDEIGFNAQRHTENYPAHLCLGSCALSMSQGYRVEFSHYQQLCHEVLIPEPM >Mature_309_residues MFFEGSEKKIEVIVTREFGSLRALGREFWKEMVACANAEILSSINNEHCDAYLLSESSLFVWDDRFLMLTCGTTTLAKAV VRFINEVGAEKIAFASYQRKNEYLSHLQSSAFTDDLTAIRALLPGDAFRIGHLDSHHHYIFTSNKPYEATADDHTSELLM YHIRGEAADYLRSEHQSAAEIRRLLQLDAMLPGFVFDDFLFEPFGYSINGIRGDRYMTIHITPQENSSYVSFETNLPLEG EYRQIFSRLLGILNPGSWDEIGFNAQRHTENYPAHLCLGSCALSMSQGYRVEFSHYQQLCHEVLIPEPM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI74275346, Length=276, Percent_Identity=33.3333333333333, Blast_Score=128, Evalue=6e-30, Organism=Homo sapiens, GI74275348, Length=133, Percent_Identity=33.0827067669173, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17508719, Length=275, Percent_Identity=33.4545454545455, Blast_Score=116, Evalue=2e-26, Organism=Saccharomyces cerevisiae, GI6324521, Length=293, Percent_Identity=26.962457337884, Blast_Score=74, Evalue=4e-14, Organism=Drosophila melanogaster, GI24583360, Length=282, Percent_Identity=32.2695035460993, Blast_Score=137, Evalue=6e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35323; Mature: 35323
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: PS01336 ADOMETDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFFEGSEKKIEVIVTREFGSLRALGREFWKEMVACANAEILSSINNEHCDAYLLSESSLF CCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCEEE VWDDRFLMLTCGTTTLAKAVVRFINEVGAEKIAFASYQRKNEYLSHLQSSAFTDDLTAIR EEECCEEEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH ALLPGDAFRIGHLDSHHHYIFTSNKPYEATADDHTSELLMYHIRGEAADYLRSEHQSAAE HHCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCHHHEEEEEECCHHHHHHHHHHHHHHH IRRLLQLDAMLPGFVFDDFLFEPFGYSINGIRGDRYMTIHITPQENSSYVSFETNLPLEG HHHHHHHHHCCCCHHHHHHHHCCCCCEEECCCCCEEEEEEEEECCCCCEEEEECCCCCCC EYRQIFSRLLGILNPGSWDEIGFNAQRHTENYPAHLCLGSCALSMSQGYRVEFSHYQQLC HHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHH HEVLIPEPM HHHCCCCCC >Mature Secondary Structure MFFEGSEKKIEVIVTREFGSLRALGREFWKEMVACANAEILSSINNEHCDAYLLSESSLF CCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEECCEEE VWDDRFLMLTCGTTTLAKAVVRFINEVGAEKIAFASYQRKNEYLSHLQSSAFTDDLTAIR EEECCEEEEEECHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH ALLPGDAFRIGHLDSHHHYIFTSNKPYEATADDHTSELLMYHIRGEAADYLRSEHQSAAE HHCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCHHHEEEEEECCHHHHHHHHHHHHHHH IRRLLQLDAMLPGFVFDDFLFEPFGYSINGIRGDRYMTIHITPQENSSYVSFETNLPLEG HHHHHHHHHCCCCHHHHHHHHCCCCCEEECCCCCEEEEEEEEECCCCCEEEEECCCCCCC EYRQIFSRLLGILNPGSWDEIGFNAQRHTENYPAHLCLGSCALSMSQGYRVEFSHYQQLC HHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHH HEVLIPEPM HHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA