| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is hisD [H]
Identifier: 119775077
GI number: 119775077
Start: 2369838
End: 2371145
Strand: Direct
Name: hisD [H]
Synonym: Sama_1942
Alternate gene names: 119775077
Gene position: 2369838-2371145 (Clockwise)
Preceding gene: 119775076
Following gene: 119775078
Centisome position: 55.03
GC content: 57.72
Gene sequence:
>1308_bases ATGGAAACCTTGGTCTGGAACACCTTAAGCGAGGATGCCAAGCGCCAGGCGCTGTCCCGCTCACCTCTGGTGGGGGATGA TAGTCTGGCGACATCCGTCAGTGACATTCTTTGCAATGTGAAGCGTCGCGGCGACAGCACCCTGATTGAATACGCGGCGC GCTTCGATAAAGCCGAAATCGATACGCTGGCGCTGAGTGCGGACGAAATCGCAGCAGCCTGCGAGCGTGTAAGCCCTGAG CTTAAAGACGCCATCAACGCCGCCCGCACCAACATTGCCCGTTTTCATAGCGCCCAGCAGTTCAGCGAAATCAGCCTGGA GACCCAACCGGGAGTTCGCTGCGAGCTTAAAAGTGAGGCCATTGAAAAGGTGGGGCTTTATATTCCGGGCGGTAGTGCCC CCCTTATCAGCACAGTGTTGATGTTGGCCGTGCCTGCCGCTATCGCTGGTTGTACCAAGCGGGTACTGGTAAGCCCACCG CCCATTGATGACGCCATTCTTTATGCTGCCAGCGTGTGCGGCATTACCGATGTGTTCCAGATAGGCGGCGCCCAGGCCAT TGCGGCGCTCGCCTACGGCACTGAGAGCGTACCAAAAGTGGACAAGATTTTTGGGCCCGGCAATCGTTACGTGACCGAAG CCAAGGCCCAGGTGGCAAGGGATACCCAGGCTGCCGTCACCATCGACATGCCAGCCGGTCCTTCCGAAGTGCTGGTGATT GCCGATGATGCCGCCAACCCCGAGTTTATCGCAGCAGACCTCTTGTCTCAGGCCGAGCACGGCAGTGACTCACAGGTGAT TTTTGTCACCGACTCCCGCACCCAGGCAAACGCGGTTGAAGCGGCCCTTGAGCGCCAGCTCACCCTGCTGCCCAGAAGAG AAACTGCAGAAGGGGCGCTGTCATGCAGCCGTATTATCATTACTGCCACCCTGGATGAGGCGGCAATCGTGTCTAACCTC TATGCCCCTGAGCACCTCATTATTCAAACCAGAGAGCCAAGGGCGCTGCTGCCACGTATTCGTGCGGCTGGGTCCGTATT TTTAGGCGCCTATACGCCGGAATCGGTTGGCGACTATGCCTCCGGCACCAACCACGTGCTGCCCACTTACGGTTACAGTA AGACCGTCTCCAGTTTGTCGCTGGCCGATTTTTGCCGCCGCTTTACCGTGCAGGAGTTGAGTGCAGAAGGACTGAAGGGA CTCGGTCAAACCGTGATGACTCTGGCTGCGGCCGAGTCGCTGGATGCCCACAAAAATGCAGTAAAAGTCAGGCTTGATGC CATCGCACGTGAGGAGAATCGTCAATGA
Upstream 100 bases:
>100_bases CAGCACCGAAGACTTGTTCTGGGACACCATGGAAGAACTGACGGCCCTCGGTGCCAGCTCGATTCTGGTGATGCCAATCG AAAAAATGATGGGGTAAGCG
Downstream 100 bases:
>100_bases CATCTCAGGTAAACGCAGTGCCAACGGATAGCCTGGCAGCCCGCCTCGCCCGCCCTGAGCTTTTAAGCCTTGAGCCCTAC CAGAGCGCCCGGCGCATCGG
Product: histidinol dehydrogenase
Products: NA
Alternate protein names: HDH [H]
Number of amino acids: Translated: 435; Mature: 435
Protein sequence:
>435_residues METLVWNTLSEDAKRQALSRSPLVGDDSLATSVSDILCNVKRRGDSTLIEYAARFDKAEIDTLALSADEIAAACERVSPE LKDAINAARTNIARFHSAQQFSEISLETQPGVRCELKSEAIEKVGLYIPGGSAPLISTVLMLAVPAAIAGCTKRVLVSPP PIDDAILYAASVCGITDVFQIGGAQAIAALAYGTESVPKVDKIFGPGNRYVTEAKAQVARDTQAAVTIDMPAGPSEVLVI ADDAANPEFIAADLLSQAEHGSDSQVIFVTDSRTQANAVEAALERQLTLLPRRETAEGALSCSRIIITATLDEAAIVSNL YAPEHLIIQTREPRALLPRIRAAGSVFLGAYTPESVGDYASGTNHVLPTYGYSKTVSSLSLADFCRRFTVQELSAEGLKG LGQTVMTLAAAESLDAHKNAVKVRLDAIAREENRQ
Sequences:
>Translated_435_residues METLVWNTLSEDAKRQALSRSPLVGDDSLATSVSDILCNVKRRGDSTLIEYAARFDKAEIDTLALSADEIAAACERVSPE LKDAINAARTNIARFHSAQQFSEISLETQPGVRCELKSEAIEKVGLYIPGGSAPLISTVLMLAVPAAIAGCTKRVLVSPP PIDDAILYAASVCGITDVFQIGGAQAIAALAYGTESVPKVDKIFGPGNRYVTEAKAQVARDTQAAVTIDMPAGPSEVLVI ADDAANPEFIAADLLSQAEHGSDSQVIFVTDSRTQANAVEAALERQLTLLPRRETAEGALSCSRIIITATLDEAAIVSNL YAPEHLIIQTREPRALLPRIRAAGSVFLGAYTPESVGDYASGTNHVLPTYGYSKTVSSLSLADFCRRFTVQELSAEGLKG LGQTVMTLAAAESLDAHKNAVKVRLDAIAREENRQ >Mature_435_residues METLVWNTLSEDAKRQALSRSPLVGDDSLATSVSDILCNVKRRGDSTLIEYAARFDKAEIDTLALSADEIAAACERVSPE LKDAINAARTNIARFHSAQQFSEISLETQPGVRCELKSEAIEKVGLYIPGGSAPLISTVLMLAVPAAIAGCTKRVLVSPP PIDDAILYAASVCGITDVFQIGGAQAIAALAYGTESVPKVDKIFGPGNRYVTEAKAQVARDTQAAVTIDMPAGPSEVLVI ADDAANPEFIAADLLSQAEHGSDSQVIFVTDSRTQANAVEAALERQLTLLPRRETAEGALSCSRIIITATLDEAAIVSNL YAPEHLIIQTREPRALLPRIRAAGSVFLGAYTPESVGDYASGTNHVLPTYGYSKTVSSLSLADFCRRFTVQELSAEGLKG LGQTVMTLAAAESLDAHKNAVKVRLDAIAREENRQ
Specific function: Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine [H]
COG id: COG0141
COG function: function code E; Histidinol dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the histidinol dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1788331, Length=426, Percent_Identity=61.2676056338028, Blast_Score=521, Evalue=1e-149, Organism=Saccharomyces cerevisiae, GI6319819, Length=418, Percent_Identity=46.4114832535885, Blast_Score=372, Evalue=1e-104,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016161 - InterPro: IPR022695 - InterPro: IPR001692 - InterPro: IPR012131 [H]
Pfam domain/function: PF00815 Histidinol_dh [H]
EC number: =1.1.1.23 [H]
Molecular weight: Translated: 46240; Mature: 46240
Theoretical pI: Translated: 4.67; Mature: 4.67
Prosite motif: PS00611 HISOL_DEHYDROGENASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METLVWNTLSEDAKRQALSRSPLVGDDSLATSVSDILCNVKRRGDSTLIEYAARFDKAEI CCCEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHH DTLALSADEIAAACERVSPELKDAINAARTNIARFHSAQQFSEISLETQPGVRCELKSEA HHHEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHH IEKVGLYIPGGSAPLISTVLMLAVPAAIAGCTKRVLVSPPPIDDAILYAASVCGITDVFQ HHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCHHHHHH IGGAQAIAALAYGTESVPKVDKIFGPGNRYVTEAKAQVARDTQAAVTIDMPAGPSEVLVI HCCHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEE ADDAANPEFIAADLLSQAEHGSDSQVIFVTDSRTQANAVEAALERQLTLLPRRETAEGAL ECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHH SCSRIIITATLDEAAIVSNLYAPEHLIIQTREPRALLPRIRAAGSVFLGAYTPESVGDYA CCCEEEEEEECCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEECCCCHHHCCCC SGTNHVLPTYGYSKTVSSLSLADFCRRFTVQELSAEGLKGLGQTVMTLAAAESLDAHKNA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKVRLDAIAREENRQ HEEHHHHHHHHCCCC >Mature Secondary Structure METLVWNTLSEDAKRQALSRSPLVGDDSLATSVSDILCNVKRRGDSTLIEYAARFDKAEI CCCEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHH DTLALSADEIAAACERVSPELKDAINAARTNIARFHSAQQFSEISLETQPGVRCELKSEA HHHEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHH IEKVGLYIPGGSAPLISTVLMLAVPAAIAGCTKRVLVSPPPIDDAILYAASVCGITDVFQ HHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHCHHHHHH IGGAQAIAALAYGTESVPKVDKIFGPGNRYVTEAKAQVARDTQAAVTIDMPAGPSEVLVI HCCHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCEEEE ADDAANPEFIAADLLSQAEHGSDSQVIFVTDSRTQANAVEAALERQLTLLPRRETAEGAL ECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHH SCSRIIITATLDEAAIVSNLYAPEHLIIQTREPRALLPRIRAAGSVFLGAYTPESVGDYA CCCEEEEEEECCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEECCCCHHHCCCC SGTNHVLPTYGYSKTVSSLSLADFCRRFTVQELSAEGLKGLGQTVMTLAAAESLDAHKNA CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VKVRLDAIAREENRQ HEEHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]