| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119775070
Identifier: 119775070
GI number: 119775070
Start: 2362640
End: 2363575
Strand: Reverse
Name: 119775070
Synonym: Sama_1935
Alternate gene names: NA
Gene position: 2363575-2362640 (Counterclockwise)
Preceding gene: 119775071
Following gene: 119775069
Centisome position: 54.89
GC content: 55.45
Gene sequence:
>936_bases ATGACGAATGAGTTTCAAGAGCTGGAACTCGCCTTGCCTCATATCAGGCTGGCCGGGTGGCAACATGGTTCCACGGCGAG TGACGGTGCCAAACCGGACTCGCAGGGGCATGGGCAATCCAAGCCACTGGTGCTGGCACTTCACGGTTGGCTTGATAACG CCCAGAGTTTTGCGCCGCTCGCGGCCTCATTGAAGGATGTCAGACTGTTGGCCATTGACTGGCCGGGACATGGACGGTCA GCCCACAGGCCAGGGGAGTATCCCCTGCACTGGATAGACTACCTTTATGATTTGCACGCACTGTTACAGTTTTTAATGGT TCGCGGTGACAGGCCTGTGGCCATTATTGGTCATTCACTGGGCGGTATAGTCGCCAGCGCTTACGTAGCCGCCCACCCGG ATGCCTGTAAAAAGCTGATCCTGATAGAAGCGCTTGGGCCGCTCAGTGAGAGGCCGGGCAAGAGTCAGAAGCGGCTGGTG GATAGTTTTGCATCTCACACAGCCTTATCCGAAAAAAAGACCACAGGCGAGCAGGCAAAGGCTTATACCAGTCTGGATGC CATAGTCGAGGCAAGACACAGATTGACCGGACTCAATAAAACGGCCTGTGAGTTGATTCTGGCACGTAATTTTGAATATC GCAGTGGGGGCGACCACGCAGGCTGGTATAACAAAACTGACCCCCGACTCAAGCTCGATTCACCGCTCAGGCTCACACCG GCTCACGCTGAGGCGTTTATCAGAGGTCTGGAAATGCCAACCCTGTTACTGATGGGAGAGCAGGGATTTGCTAAGCTGCA CGAGGCGTTGGAGCATGCACGCCCCCTCTATCGGCAGCTGCAGGTGCACACTATCGCAGGCGATCATCATCTTCATATGT CCGACCCGGAGACCACCGCCGATGCTATTCGTCACTTTCTGAGCACCTGCGGATAA
Upstream 100 bases:
>100_bases CGGGAAATGCCGATACCGGAACACCGCCGGTGTCGGCATTTTTCACTGTAGGTCAGTGTTGGGATGAGAGAGCGGCAGTA ATAACTAAGCGAGAGTTTTA
Downstream 100 bases:
>100_bases GCCTTAAAAAGGGGCTGGGCTTTTAAGCGCAATTATGTGATGATTGTCAAAAATTTAAACGCCCGTATGATTTTCGTGCG TAAGTAATAATAACAAGTTA
Product: alpha/beta fold family hydrolase
Products: NA
Alternate protein names: Hydrolase; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase Fold Protein; Hydrolase Alpha/Beta Fold Family; Alpha/Beta Hydrolase; Hydrolase Protein; Hydrolase/Acyltransferase; Lipase A; Lipase; Hydrolase Alpha/Beta Fold Family Protein; Beta-Ketoacyl Synthase; Alpha/Beta Fold Superfamily Hydrolase; Hydrolase Or Acytransferase; Alpha/Beta Hydrolase Family Protein; Lipase LipA; Epoxide Hydrolase; Alpha/Beta Superfamily Hydrolase; Alpha/Beta Fold Hydrolase Family Protein
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MTNEFQELELALPHIRLAGWQHGSTASDGAKPDSQGHGQSKPLVLALHGWLDNAQSFAPLAASLKDVRLLAIDWPGHGRS AHRPGEYPLHWIDYLYDLHALLQFLMVRGDRPVAIIGHSLGGIVASAYVAAHPDACKKLILIEALGPLSERPGKSQKRLV DSFASHTALSEKKTTGEQAKAYTSLDAIVEARHRLTGLNKTACELILARNFEYRSGGDHAGWYNKTDPRLKLDSPLRLTP AHAEAFIRGLEMPTLLLMGEQGFAKLHEALEHARPLYRQLQVHTIAGDHHLHMSDPETTADAIRHFLSTCG
Sequences:
>Translated_311_residues MTNEFQELELALPHIRLAGWQHGSTASDGAKPDSQGHGQSKPLVLALHGWLDNAQSFAPLAASLKDVRLLAIDWPGHGRS AHRPGEYPLHWIDYLYDLHALLQFLMVRGDRPVAIIGHSLGGIVASAYVAAHPDACKKLILIEALGPLSERPGKSQKRLV DSFASHTALSEKKTTGEQAKAYTSLDAIVEARHRLTGLNKTACELILARNFEYRSGGDHAGWYNKTDPRLKLDSPLRLTP AHAEAFIRGLEMPTLLLMGEQGFAKLHEALEHARPLYRQLQVHTIAGDHHLHMSDPETTADAIRHFLSTCG >Mature_310_residues TNEFQELELALPHIRLAGWQHGSTASDGAKPDSQGHGQSKPLVLALHGWLDNAQSFAPLAASLKDVRLLAIDWPGHGRSA HRPGEYPLHWIDYLYDLHALLQFLMVRGDRPVAIIGHSLGGIVASAYVAAHPDACKKLILIEALGPLSERPGKSQKRLVD SFASHTALSEKKTTGEQAKAYTSLDAIVEARHRLTGLNKTACELILARNFEYRSGGDHAGWYNKTDPRLKLDSPLRLTPA HAEAFIRGLEMPTLLLMGEQGFAKLHEALEHARPLYRQLQVHTIAGDHHLHMSDPETTADAIRHFLSTCG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI18777795, Length=318, Percent_Identity=26.4150943396226, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI24667992, Length=320, Percent_Identity=25.3125, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI24655874, Length=284, Percent_Identity=30.6338028169014, Blast_Score=93, Evalue=2e-19, Organism=Drosophila melanogaster, GI21357291, Length=317, Percent_Identity=25.2365930599369, Blast_Score=93, Evalue=3e-19, Organism=Drosophila melanogaster, GI24667999, Length=323, Percent_Identity=27.5541795665635, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI17137390, Length=301, Percent_Identity=26.578073089701, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI21356937, Length=282, Percent_Identity=23.4042553191489, Blast_Score=78, Evalue=9e-15, Organism=Drosophila melanogaster, GI24655886, Length=161, Percent_Identity=32.2981366459627, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI21356953, Length=114, Percent_Identity=35.0877192982456, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34235; Mature: 34104
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: PS00120 LIPASE_SER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNEFQELELALPHIRLAGWQHGSTASDGAKPDSQGHGQSKPLVLALHGWLDNAQSFAPL CCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHH AASLKDVRLLAIDWPGHGRSAHRPGEYPLHWIDYLYDLHALLQFLMVRGDRPVAIIGHSL HHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHH GGIVASAYVAAHPDACKKLILIEALGPLSERPGKSQKRLVDSFASHTALSEKKTTGEQAK HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH AYTSLDAIVEARHRLTGLNKTACELILARNFEYRSGGDHAGWYNKTDPRLKLDSPLRLTP HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCEECH AHAEAFIRGLEMPTLLLMGEQGFAKLHEALEHARPLYRQLQVHTIAGDHHLHMSDPETTA HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEECCCEEECCCCCHHH DAIRHFLSTCG HHHHHHHHHCC >Mature Secondary Structure TNEFQELELALPHIRLAGWQHGSTASDGAKPDSQGHGQSKPLVLALHGWLDNAQSFAPL CCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHH AASLKDVRLLAIDWPGHGRSAHRPGEYPLHWIDYLYDLHALLQFLMVRGDRPVAIIGHSL HHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHH GGIVASAYVAAHPDACKKLILIEALGPLSERPGKSQKRLVDSFASHTALSEKKTTGEQAK HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH AYTSLDAIVEARHRLTGLNKTACELILARNFEYRSGGDHAGWYNKTDPRLKLDSPLRLTP HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCEECH AHAEAFIRGLEMPTLLLMGEQGFAKLHEALEHARPLYRQLQVHTIAGDHHLHMSDPETTA HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEECCCEEECCCCCHHH DAIRHFLSTCG HHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA