| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775052
Identifier: 119775052
GI number: 119775052
Start: 2343453
End: 2344607
Strand: Reverse
Name: 119775052
Synonym: Sama_1917
Alternate gene names: NA
Gene position: 2344607-2343453 (Counterclockwise)
Preceding gene: 119775054
Following gene: 119775051
Centisome position: 54.45
GC content: 53.42
Gene sequence:
>1155_bases ATGATGAAATCCTTTCTCAAAGTTGCATTAGGTCTTGGGCTGCTGTTTGGCCATGTTGGCGCCGAGGCAGTTCAGGTCAG CCGTTTGAACGAGGCCGATGTGGCTGTCAGTTCAAGAAGCAGTGCTGAGCTTGAACAAGCCATTAAAGATGCCTTGGCCA AGGTGTTGGTAAAAAACAGTGGCAGCACGGAAACACTTGTTAATGCCGAAGTGCAGTCGCTGATTGCTCAGGCACGATCT GTGCTGAGCCAATATGGCTATGTCGAAAATGATGGGCGCTTATACGTTCGGGCGAGTTTCGATAACACCCGGGTCACCTC AACCCTTCGCAGCGCGCAGTTGCCTGTATGGGGCAAACAGCGTCCCCTGACCTTGCTGTGGCTGGCCACCGATGGTGAAG GGGAGAAGGTGTTGCTGGGCGACCAATCGGATTTGGCTATTCGCAGTCAGTTCAATGATGCCAGCGCTCAGGCTGGGGTG CCTTTACTGTTTCCCTTGCTGGACTTGGACGACATGATGGCGGCTAACATCAATTCTGTCAGAGGTTTTTTTGCAGATGA AGTAGCCCAGGCATCCCGCCGATATCAGTCGGACTTTTTTGCACTGGCGACCCTTGAAGCAGCCGGTTCGGGTTACGAAT ATCGTCTGGCTCTCTACCCAAGGCAGGCTCAGAGCGATATCGCAACACCGCTGCAATCTGTAACTCAGGTGGAAGGCAGT GCTGACAATCTTGACAGTGCCATCAGTGCCATCCTATCCGGTATGAGCTCCTTTTACGTGTCACGTTATGCTGTGACCGG AACCAGTCAGGAAAGTGAAACCGAGTTGGTGTTTACCGGTGTGGACCGCCTTAAAGCTGTGGTGGATATAGAGACTTATC TGGGGCAGCTTTCTATGGTCAAATCTGCCCGTTTGGTGAGTATCGAAGGCGATTCTCTGCGCTTTGCGCTGACACTCTTT GGCAGTGAGGATGAGCTCAGGCGAACCCTGGCGCTGGAACCACGTCTTCAGCCCCAAGGCGGAACTGAAAATAACAGCCA ACAGGGTGAAGGTACCATTGTCGACCCATTCGCCACCGCTGTGCAGCCCGGTGAGATCCTGGAAGTGCCCGGTGTGCCTG TGCAGCCAAATCGTTACCAATGGCGTGGTCAATGA
Upstream 100 bases:
>100_bases TGGCCAATAACTGACCCGGCCGCGTCTTTTTGTCGCTGTGTTGCCGCGCTGTAAGTATGTTACACTGCCGCTCTATCATT GTTGGGAACGACCATTTTTC
Downstream 100 bases:
>100_bases GCCTTGCGGCTCGGAATTTAACGGCGTCCGTGATACACTGACGCCGTTTTTATTCAGGTGCCACAAGATAGATTGAGAAG TAACCGAGTGACACAACATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 384; Mature: 384
Protein sequence:
>384_residues MMKSFLKVALGLGLLFGHVGAEAVQVSRLNEADVAVSSRSSAELEQAIKDALAKVLVKNSGSTETLVNAEVQSLIAQARS VLSQYGYVENDGRLYVRASFDNTRVTSTLRSAQLPVWGKQRPLTLLWLATDGEGEKVLLGDQSDLAIRSQFNDASAQAGV PLLFPLLDLDDMMAANINSVRGFFADEVAQASRRYQSDFFALATLEAAGSGYEYRLALYPRQAQSDIATPLQSVTQVEGS ADNLDSAISAILSGMSSFYVSRYAVTGTSQESETELVFTGVDRLKAVVDIETYLGQLSMVKSARLVSIEGDSLRFALTLF GSEDELRRTLALEPRLQPQGGTENNSQQGEGTIVDPFATAVQPGEILEVPGVPVQPNRYQWRGQ
Sequences:
>Translated_384_residues MMKSFLKVALGLGLLFGHVGAEAVQVSRLNEADVAVSSRSSAELEQAIKDALAKVLVKNSGSTETLVNAEVQSLIAQARS VLSQYGYVENDGRLYVRASFDNTRVTSTLRSAQLPVWGKQRPLTLLWLATDGEGEKVLLGDQSDLAIRSQFNDASAQAGV PLLFPLLDLDDMMAANINSVRGFFADEVAQASRRYQSDFFALATLEAAGSGYEYRLALYPRQAQSDIATPLQSVTQVEGS ADNLDSAISAILSGMSSFYVSRYAVTGTSQESETELVFTGVDRLKAVVDIETYLGQLSMVKSARLVSIEGDSLRFALTLF GSEDELRRTLALEPRLQPQGGTENNSQQGEGTIVDPFATAVQPGEILEVPGVPVQPNRYQWRGQ >Mature_384_residues MMKSFLKVALGLGLLFGHVGAEAVQVSRLNEADVAVSSRSSAELEQAIKDALAKVLVKNSGSTETLVNAEVQSLIAQARS VLSQYGYVENDGRLYVRASFDNTRVTSTLRSAQLPVWGKQRPLTLLWLATDGEGEKVLLGDQSDLAIRSQFNDASAQAGV PLLFPLLDLDDMMAANINSVRGFFADEVAQASRRYQSDFFALATLEAAGSGYEYRLALYPRQAQSDIATPLQSVTQVEGS ADNLDSAISAILSGMSSFYVSRYAVTGTSQESETELVFTGVDRLKAVVDIETYLGQLSMVKSARLVSIEGDSLRFALTLF GSEDELRRTLALEPRLQPQGGTENNSQQGEGTIVDPFATAVQPGEILEVPGVPVQPNRYQWRGQ
Specific function: Unknown
COG id: COG3249
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41544; Mature: 41544
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKSFLKVALGLGLLFGHVGAEAVQVSRLNEADVAVSSRSSAELEQAIKDALAKVLVKNS CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHEECCCCHHHHHHHHHHHHHHHHHCCC GSTETLVNAEVQSLIAQARSVLSQYGYVENDGRLYVRASFDNTRVTSTLRSAQLPVWGKQ CCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEEEECCCCHHHHHHHHCCCCCCCCC RPLTLLWLATDGEGEKVLLGDQSDLAIRSQFNDASAQAGVPLLFPLLDLDDMMAANINSV CCEEEEEEEECCCCCEEEECCCCCEEEECCCCCCHHHCCCCCEEHHHCHHHHHHHCHHHH RGFFADEVAQASRRYQSDFFALATLEAAGSGYEYRLALYPRQAQSDIATPLQSVTQVEGS HHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCC ADNLDSAISAILSGMSSFYVSRYAVTGTSQESETELVFTGVDRLKAVVDIETYLGQLSMV CCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH KSARLVSIEGDSLRFALTLFGSEDELRRTLALEPRLQPQGGTENNSQQGEGTIVDPFATA CCCEEEEECCCCEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECHHHHH VQPGEILEVPGVPVQPNRYQWRGQ CCCCCEEECCCCCCCCCCCCCCCC >Mature Secondary Structure MMKSFLKVALGLGLLFGHVGAEAVQVSRLNEADVAVSSRSSAELEQAIKDALAKVLVKNS CHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHEECCCCHHHHHHHHHHHHHHHHHCCC GSTETLVNAEVQSLIAQARSVLSQYGYVENDGRLYVRASFDNTRVTSTLRSAQLPVWGKQ CCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEEEECCCCHHHHHHHHCCCCCCCCC RPLTLLWLATDGEGEKVLLGDQSDLAIRSQFNDASAQAGVPLLFPLLDLDDMMAANINSV CCEEEEEEEECCCCCEEEECCCCCEEEECCCCCCHHHCCCCCEEHHHCHHHHHHHCHHHH RGFFADEVAQASRRYQSDFFALATLEAAGSGYEYRLALYPRQAQSDIATPLQSVTQVEGS HHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCC ADNLDSAISAILSGMSSFYVSRYAVTGTSQESETELVFTGVDRLKAVVDIETYLGQLSMV CCHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH KSARLVSIEGDSLRFALTLFGSEDELRRTLALEPRLQPQGGTENNSQQGEGTIVDPFATA CCCEEEEECCCCEEEEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECHHHHH VQPGEILEVPGVPVQPNRYQWRGQ CCCCCEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA