Click here to switch to the map view.

The map label for this gene is rnfD

Identifier: 119774968

GI number: 119774968

Start: 2233471

End: 2234517

Strand: Direct

Name: rnfD

Synonym: Sama_1833

Alternate gene names: 119774968

Gene position: 2233471-2234517 (Clockwise)

Preceding gene: 119774967

Following gene: 119774969

Centisome position: 51.87

GC content: 56.35

Gene sequence:

>1047_bases
ATGGCGTTCAAGATTGCATCCTCACCCCATGTCCGCAAAGACAGCCAAACCTCGGCTGTGATGCAGCGCGTCATTCTTGC
CGCCTTACCTGGCCTTGCCGTGCAATGCTATTTCTTTGGTTGGGGCACCTTTATTCAGGTGTGTGTTGCCATCGCGACGG
CACTTGCCGCCGAGGCACTGGTATTGAAGCTTAGAAACCGCCCGATATCACCTACCTTGATGGATCAGAGTGCTGTGCTG
ACCGCTCTCCTGATTGGTGTCGCCATTCCACCGCTGGCACCCTGGTATTTGGTAGTCATAGGCACGGTATTCGCCATCGT
GATGGTCAAACAGCTTTATGGCGGTTTGGGGCAAAACCTCTTTAACCCTGCTATGGCCGCCTATGTATTGCTTCTGGTGT
CTTTCCCGGTTCTGATGACGACCTGGGCTGCCCCCAGTACCCTGGCACAAAGCAGTGCTGGTATCCTGGATGCCATTGAC
GTGATTTTTTCAGCCCAGGGCGCAGCAGATTTTGCGCTGGGAATTGATGGCGTCTCCATGGCGACACCACTGGACACCTT
GAAAACCGATCTTTCCATGGGGCTTACCGCAGATGAAAGTCTGAAACGCGCCATCTTCGGTGGCGGCAGCACCGGTGAAG
GCTGGTTCTGGGTGAACCTCGCTTATCTGTGTGGCGGTTTGTTTTTGCTCGCCACCAAGACCATCCGCTGGCACATCAGC
GGTGGGCTCATCGGCGCCCTTTTTGTGTGCAGTCTCTTTGGCTTTGGCGCCTCGCCAGACACCCACGCCAGCCCCCTGTT
TAACCTCTTCAGCGGCGCTACCATGCTGGCTGCCTTTTTTATCGCCACCGACCCGGTTACCGCAGCCACCAGTCCTCGCG
GGCGGCTGCTCTTTGGGGCCATGATAGGGGTGCTGATTTATCTTATTCGCACCTTTGGTGGTTACCCCGATGGTGTGGCG
TTCGCGGTATTGCTGGCTAACCTCTGCGCTCCACTAATCGACTATTACATCAAGCCACGGGCCTATGGCCACCGTGGCAG
CCTGTAG

Upstream 100 bases:

>100_bases
AGGTTCCACCAACCGATGCCGATACGCTCAAAAAAGCCCGTATTGCTGCGGCTGTCGCCAAAGCCAAGGCAAAAAAAGCC
GCCAAGGAGCATGAATAATC

Downstream 100 bases:

>100_bases
GACCTGGCGATGCAAAAATCCATCATCAAAAACGGACTCCTCTTAAGCGGTTTTGCGCTTATCTGTACCGCAGCGGTTGC
GCTGGTGAACGAGGCTACCA

Product: electron transport complex protein RnfD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MAFKIASSPHVRKDSQTSAVMQRVILAALPGLAVQCYFFGWGTFIQVCVAIATALAAEALVLKLRNRPISPTLMDQSAVL
TALLIGVAIPPLAPWYLVVIGTVFAIVMVKQLYGGLGQNLFNPAMAAYVLLLVSFPVLMTTWAAPSTLAQSSAGILDAID
VIFSAQGAADFALGIDGVSMATPLDTLKTDLSMGLTADESLKRAIFGGGSTGEGWFWVNLAYLCGGLFLLATKTIRWHIS
GGLIGALFVCSLFGFGASPDTHASPLFNLFSGATMLAAFFIATDPVTAATSPRGRLLFGAMIGVLIYLIRTFGGYPDGVA
FAVLLANLCAPLIDYYIKPRAYGHRGSL

Sequences:

>Translated_348_residues
MAFKIASSPHVRKDSQTSAVMQRVILAALPGLAVQCYFFGWGTFIQVCVAIATALAAEALVLKLRNRPISPTLMDQSAVL
TALLIGVAIPPLAPWYLVVIGTVFAIVMVKQLYGGLGQNLFNPAMAAYVLLLVSFPVLMTTWAAPSTLAQSSAGILDAID
VIFSAQGAADFALGIDGVSMATPLDTLKTDLSMGLTADESLKRAIFGGGSTGEGWFWVNLAYLCGGLFLLATKTIRWHIS
GGLIGALFVCSLFGFGASPDTHASPLFNLFSGATMLAAFFIATDPVTAATSPRGRLLFGAMIGVLIYLIRTFGGYPDGVA
FAVLLANLCAPLIDYYIKPRAYGHRGSL
>Mature_347_residues
AFKIASSPHVRKDSQTSAVMQRVILAALPGLAVQCYFFGWGTFIQVCVAIATALAAEALVLKLRNRPISPTLMDQSAVLT
ALLIGVAIPPLAPWYLVVIGTVFAIVMVKQLYGGLGQNLFNPAMAAYVLLLVSFPVLMTTWAAPSTLAQSSAGILDAIDV
IFSAQGAADFALGIDGVSMATPLDTLKTDLSMGLTADESLKRAIFGGGSTGEGWFWVNLAYLCGGLFLLATKTIRWHISG
GLIGALFVCSLFGFGASPDTHASPLFNLFSGATMLAAFFIATDPVTAATSPRGRLLFGAMIGVLIYLIRTFGGYPDGVAF
AVLLANLCAPLIDYYIKPRAYGHRGSL

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family

Homologues:

Organism=Escherichia coli, GI1787917, Length=350, Percent_Identity=57.4285714285714, Blast_Score=409, Evalue=1e-115,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFD_SHEAM (A1S6N2)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_927708.1
- STRING:   A1S6N2
- GeneID:   4604083
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_1833
- NMPDR:   fig|326297.7.peg.1725
- eggNOG:   COG4658
- HOGENOM:   HBG454412
- OMA:   NPAMVAY
- PhylomeDB:   A1S6N2
- ProtClustDB:   PRK00816
- GO:   GO:0006810
- HAMAP:   MF_00462
- InterPro:   IPR011303
- InterPro:   IPR004338
- TIGRFAMs:   TIGR01946

Pfam domain/function: PF03116 NQR2_RnfD_RnfE

EC number: NA

Molecular weight: Translated: 36670; Mature: 36538

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x139ca7c0)-; HASH(0x1418de88)-; HASH(0x12bf0d7c)-; HASH(0x141990b4)-; HASH(0x137e2484)-; HASH(0x13d75aa4)-; HASH(0x141d7748)-; HASH(0x13cfc224)-; HASH(0x141b9788)-;

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKIASSPHVRKDSQTSAVMQRVILAALPGLAVQCYFFGWGTFIQVCVAIATALAAEAL
CCEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHH
VLKLRNRPISPTLMDQSAVLTALLIGVAIPPLAPWYLVVIGTVFAIVMVKQLYGGLGQNL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH
FNPAMAAYVLLLVSFPVLMTTWAAPSTLAQSSAGILDAIDVIFSAQGAADFALGIDGVSM
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCCCHHEECCCCCCH
ATPLDTLKTDLSMGLTADESLKRAIFGGGSTGEGWFWVNLAYLCGGLFLLATKTIRWHIS
HCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHEEEEC
GGLIGALFVCSLFGFGASPDTHASPLFNLFSGATMLAAFFIATDPVTAATSPRGRLLFGA
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
MIGVLIYLIRTFGGYPDGVAFAVLLANLCAPLIDYYIKPRAYGHRGSL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
>Mature Secondary Structure 
AFKIASSPHVRKDSQTSAVMQRVILAALPGLAVQCYFFGWGTFIQVCVAIATALAAEAL
CEECCCCCCCCCCCHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHH
VLKLRNRPISPTLMDQSAVLTALLIGVAIPPLAPWYLVVIGTVFAIVMVKQLYGGLGQNL
HHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHH
FNPAMAAYVLLLVSFPVLMTTWAAPSTLAQSSAGILDAIDVIFSAQGAADFALGIDGVSM
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHCCCCCHHEECCCCCCH
ATPLDTLKTDLSMGLTADESLKRAIFGGGSTGEGWFWVNLAYLCGGLFLLATKTIRWHIS
HCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHEEEEC
GGLIGALFVCSLFGFGASPDTHASPLFNLFSGATMLAAFFIATDPVTAATSPRGRLLFGA
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
MIGVLIYLIRTFGGYPDGVAFAVLLANLCAPLIDYYIKPRAYGHRGSL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA