| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is rnfC [H]
Identifier: 119774967
GI number: 119774967
Start: 2230826
End: 2233468
Strand: Direct
Name: rnfC [H]
Synonym: Sama_1832
Alternate gene names: 119774967
Gene position: 2230826-2233468 (Clockwise)
Preceding gene: 119774966
Following gene: 119774968
Centisome position: 51.81
GC content: 56.38
Gene sequence:
>2643_bases GTGCTGACGCTTTTGGAACAATTGGATAAAGGTACGCTGTGGCGCTCACCCGGTGGCATTCACCCACCCGAGATGAAATC CGTCTCCAATGGCACCGCTATCGCCACACTGCCACTGTTTGATGAGTACCTGGTACCCCTGCCTCAGGTCGGTGAACAGG CCATTCTCGCCGTAAAAGTGGGAGATACTGTACTTAAAGGGCAGATGCTGACTCAGGGCCAGGGAGTTGGCTATCTACCG GTACATGCCCCCACCTCAGGCCGCGTCAAAGCCATTGAATCACGCCCGAGCAACCATGCCTCTGCGCTGCCCATACTGAC CCTGGCATTGGAAGCCGATGGCCAGGACAAATGGTGTGAACTCCAAAGCGCGGCTTTGGATGCGTTGACCCCTGCCCAAA TGGTCAAAAGGATACAGGATGCCGGCATCGCCGGTATGGGCGGCGCTGCGTTTCCAAGCCACATTAAATTAAGTCCGGCG AGCGAAATTGAGCTGGTGATAGTCAATGGCGTTGAATGTGAACCCTACATTACCGCTGACGATCGCCTTATGCGCGAGCA CGCCGATGGGATAGTCGCTGGTATCGGTATAGTGCACCGTATCCTTGCACCCAAACGCATTATCATCGCCATCGAAGACA ACAAGCCCGAAGCCGCTGAAGCCATGCAGGCTGCCGTCAATCGCAGCCAGTTACCGGCAGGACTTGTCAGGGTCACTGTT ATCCCGACCAAATACCCTTCAGGCGGTGAAAAGCAGCTCATTCAGATAGTGACTGGCCAGGAAGTGCCCTCCGGCGCTAT TCCTGCGCAGCTCGGTATCCTGGTGCACAACGTCGGTACCCTGTTTGCAATCCGGGATGCCGTCATCGAAGGTAAGCCAC TGATAGAAAGAGTCGTCACTGTCACCGGCAATGCAGTAACCAAACCCGGGAACTACTGGACTTTAATAGGCAGCAAGGTA GAGGATGTCCTCCGCCACTGTGATTTTCGTGAAGCAGAGGCCCAAAAAATCATCATGGGTGGCCCCATGATGGGATATAC CCTGGCCAATACCCAGGTACCGATTTTGAAAGGCAGCAATTGTCTGCTGCTGCCCAACGGCCTCGAAATCACCGAGATGC CGCCTGAAAAACCCTGCATTCGCTGCGGCGAATGTGCCGTTGCCTGCCCTGCGTCCTTGCTGCCGCAGCAACTCTTTTGG CACGCCAAGGCGGAAGAATACGACAAGGCACAAAGCTATAACCTTAAAGACTGTATCGAGTGCGGATGTTGCACTTATGT CTGCCCCAGCGATATCCCGCTGGTAGAGTATTATCGGGTGGCCAAAGCCGCCATTCGCCAGCAGGCGGAAGAAAAAGCCA GTGCTGAGCGTGCCAAGGTGCGATTTGAAGCGCGCATTACCCGCCTTGAAGAAGAAAAAGCGGCCCGTGAAGCCAAGGCA AAAGAGGCGGCGGAAAAACGTAAAGCGGCCATGGCCGGTGGAGAAAAAGACGCCATCGCTGCCGCCCTCGCCCGGGTACA GGCCAAAAAAGCCGCCCAGGAACAAAATGCCGCTCCGGTCGCTGCCTCACCAGAGGGGGCTCAAGCTTCAGCGGCGGATC CAAAAGCCGGGGTTGCTGCCGCCATCGCCAGAGCCAAAGCCAAAAAGACAGCCCAACAGGAAGCAGCCAAGTCCCCCGAT ACAGCGGGCAGCACTGTGACCGATGCTGCTTCAGACCTGTCTATCGAGACGACGCCTGAGCAGGAGTCAACGCCCGCAAG CAGTGAAGATCCGAAAAAGGCCGCTGTTGCCGCAGCGATTGCCCGCGCCAAGGCAAAAAAGGCAGCGCAGGCGGCAAACA GCAATACAGCGGCTACAGACACCGCTAACGGTAATCGCCAGGTATCCTCCTTACAGGAGCCAAAAGTTCAGGCATCAGCA GTACAGCCACCTGAATCACAGGCGCAGGAGCAGGATCCCAAGCGAGCTGCTGTGGCAGCCGCCATCGCCAAAGCGAAAGC CAAAAAGTCTGCCCGGAATACGGATGAAAGCGGCTTGGCTGTGGCAGAACCGTCCGCACCAGCGACCGGGGAGGCAGAAT CAGCCCCAGCGGATGACAAATCAGCAAGAGTTGCCGCAGCGGTTGCCAAAGCCAAGGCGAAGAAGTTGGCGGCAAGTGCT TCTGACAGCCCATTCCCAGAGGATATGGCCGCTATTCCTGAAAAGAATCGCAGTGAGGCAAGCCTCGTACAAACAGATGA AAGTCTTCCTGAGACCAGGGGAGACGATAAGCCTGACAACAAAGCCGCCAGAGTGGCCGCTGCGGTTGCCAAAGCCAAGG CAAAGGCTGCGGCCAGACGTGAAGAGGCACAGCCGGATCCAGCTGTGGCTGAACACATTCAATCTGAAACGTCTCAAGCG GCCGACGCCGATGAACTTGAGACTGACATTCAGGCACCAGAGAAAAGTACCTTAACCGACATGGCCACGGCCATGCCGCC TGCAGCAAACCAAATACCAGAGCAAGGTGTTCACATCGCAGACAGCGCAAACACTGCTGCTTCAGAGGTTCCACCAACCG ATGCCGATACGCTCAAAAAAGCCCGTATTGCTGCGGCTGTCGCCAAAGCCAAGGCAAAAAAAGCCGCCAAGGAGCATGAA TAA
Upstream 100 bases:
>100_bases CTGTCGATTGCATCGACATGCTCCCTGTCACTCAGGACATCAAGACCTGGAATTGGAAACTGAGTGCCATTCCCGTGATG CAGCTCGAAGAGGACAAACA
Downstream 100 bases:
>100_bases TCATGGCGTTCAAGATTGCATCCTCACCCCATGTCCGCAAAGACAGCCAAACCTCGGCTGTGATGCAGCGCGTCATTCTT GCCGCCTTACCTGGCCTTGC
Product: electron transport complex protein RnfC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 880; Mature: 880
Protein sequence:
>880_residues MLTLLEQLDKGTLWRSPGGIHPPEMKSVSNGTAIATLPLFDEYLVPLPQVGEQAILAVKVGDTVLKGQMLTQGQGVGYLP VHAPTSGRVKAIESRPSNHASALPILTLALEADGQDKWCELQSAALDALTPAQMVKRIQDAGIAGMGGAAFPSHIKLSPA SEIELVIVNGVECEPYITADDRLMREHADGIVAGIGIVHRILAPKRIIIAIEDNKPEAAEAMQAAVNRSQLPAGLVRVTV IPTKYPSGGEKQLIQIVTGQEVPSGAIPAQLGILVHNVGTLFAIRDAVIEGKPLIERVVTVTGNAVTKPGNYWTLIGSKV EDVLRHCDFREAEAQKIIMGGPMMGYTLANTQVPILKGSNCLLLPNGLEITEMPPEKPCIRCGECAVACPASLLPQQLFW HAKAEEYDKAQSYNLKDCIECGCCTYVCPSDIPLVEYYRVAKAAIRQQAEEKASAERAKVRFEARITRLEEEKAAREAKA KEAAEKRKAAMAGGEKDAIAAALARVQAKKAAQEQNAAPVAASPEGAQASAADPKAGVAAAIARAKAKKTAQQEAAKSPD TAGSTVTDAASDLSIETTPEQESTPASSEDPKKAAVAAAIARAKAKKAAQAANSNTAATDTANGNRQVSSLQEPKVQASA VQPPESQAQEQDPKRAAVAAAIAKAKAKKSARNTDESGLAVAEPSAPATGEAESAPADDKSARVAAAVAKAKAKKLAASA SDSPFPEDMAAIPEKNRSEASLVQTDESLPETRGDDKPDNKAARVAAAVAKAKAKAAARREEAQPDPAVAEHIQSETSQA ADADELETDIQAPEKSTLTDMATAMPPAANQIPEQGVHIADSANTAASEVPPTDADTLKKARIAAAVAKAKAKKAAKEHE
Sequences:
>Translated_880_residues MLTLLEQLDKGTLWRSPGGIHPPEMKSVSNGTAIATLPLFDEYLVPLPQVGEQAILAVKVGDTVLKGQMLTQGQGVGYLP VHAPTSGRVKAIESRPSNHASALPILTLALEADGQDKWCELQSAALDALTPAQMVKRIQDAGIAGMGGAAFPSHIKLSPA SEIELVIVNGVECEPYITADDRLMREHADGIVAGIGIVHRILAPKRIIIAIEDNKPEAAEAMQAAVNRSQLPAGLVRVTV IPTKYPSGGEKQLIQIVTGQEVPSGAIPAQLGILVHNVGTLFAIRDAVIEGKPLIERVVTVTGNAVTKPGNYWTLIGSKV EDVLRHCDFREAEAQKIIMGGPMMGYTLANTQVPILKGSNCLLLPNGLEITEMPPEKPCIRCGECAVACPASLLPQQLFW HAKAEEYDKAQSYNLKDCIECGCCTYVCPSDIPLVEYYRVAKAAIRQQAEEKASAERAKVRFEARITRLEEEKAAREAKA KEAAEKRKAAMAGGEKDAIAAALARVQAKKAAQEQNAAPVAASPEGAQASAADPKAGVAAAIARAKAKKTAQQEAAKSPD TAGSTVTDAASDLSIETTPEQESTPASSEDPKKAAVAAAIARAKAKKAAQAANSNTAATDTANGNRQVSSLQEPKVQASA VQPPESQAQEQDPKRAAVAAAIAKAKAKKSARNTDESGLAVAEPSAPATGEAESAPADDKSARVAAAVAKAKAKKLAASA SDSPFPEDMAAIPEKNRSEASLVQTDESLPETRGDDKPDNKAARVAAAVAKAKAKAAARREEAQPDPAVAEHIQSETSQA ADADELETDIQAPEKSTLTDMATAMPPAANQIPEQGVHIADSANTAASEVPPTDADTLKKARIAAAVAKAKAKKAAKEHE >Mature_880_residues MLTLLEQLDKGTLWRSPGGIHPPEMKSVSNGTAIATLPLFDEYLVPLPQVGEQAILAVKVGDTVLKGQMLTQGQGVGYLP VHAPTSGRVKAIESRPSNHASALPILTLALEADGQDKWCELQSAALDALTPAQMVKRIQDAGIAGMGGAAFPSHIKLSPA SEIELVIVNGVECEPYITADDRLMREHADGIVAGIGIVHRILAPKRIIIAIEDNKPEAAEAMQAAVNRSQLPAGLVRVTV IPTKYPSGGEKQLIQIVTGQEVPSGAIPAQLGILVHNVGTLFAIRDAVIEGKPLIERVVTVTGNAVTKPGNYWTLIGSKV EDVLRHCDFREAEAQKIIMGGPMMGYTLANTQVPILKGSNCLLLPNGLEITEMPPEKPCIRCGECAVACPASLLPQQLFW HAKAEEYDKAQSYNLKDCIECGCCTYVCPSDIPLVEYYRVAKAAIRQQAEEKASAERAKVRFEARITRLEEEKAAREAKA KEAAEKRKAAMAGGEKDAIAAALARVQAKKAAQEQNAAPVAASPEGAQASAADPKAGVAAAIARAKAKKTAQQEAAKSPD TAGSTVTDAASDLSIETTPEQESTPASSEDPKKAAVAAAIARAKAKKAAQAANSNTAATDTANGNRQVSSLQEPKVQASA VQPPESQAQEQDPKRAAVAAAIAKAKAKKSARNTDESGLAVAEPSAPATGEAESAPADDKSARVAAAVAKAKAKKLAASA SDSPFPEDMAAIPEKNRSEASLVQTDESLPETRGDDKPDNKAARVAAAVAKAKAKAAARREEAQPDPAVAEHIQSETSQA ADADELETDIQAPEKSTLTDMATAMPPAANQIPEQGVHIADSANTAASEVPPTDADTLKKARIAAAVAKAKAKKAAKEHE
Specific function: May be part of a membrane complex involved in electron transport [H]
COG id: COG4656
COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Escherichia coli, GI1787916, Length=491, Percent_Identity=50.10183299389, Blast_Score=483, Evalue=1e-137,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR010208 - InterPro: IPR012285 - InterPro: IPR009051 - InterPro: IPR011538 - InterPro: IPR019554 [H]
Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]
EC number: NA
Molecular weight: Translated: 91975; Mature: 91975
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTLLEQLDKGTLWRSPGGIHPPEMKSVSNGTAIATLPLFDEYLVPLPQVGEQAILAVKV CCHHHHHHCCCCEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHCCCCCCCCCEEEEEEE GDTVLKGQMLTQGQGVGYLPVHAPTSGRVKAIESRPSNHASALPILTLALEADGQDKWCE CCHHHHCCCEECCCCCEEEEEECCCCCCEEEECCCCCCCCCCCEEEEEEEECCCCHHHHH LQSAALDALTPAQMVKRIQDAGIAGMGGAAFPSHIKLSPASEIELVIVNGVECEPYITAD HHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCEECCH DRLMREHADGIVAGIGIVHRILAPKRIIIAIEDNKPEAAEAMQAAVNRSQLPAGLVRVTV HHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEE IPTKYPSGGEKQLIQIVTGQEVPSGAIPAQLGILVHNVGTLFAIRDAVIEGKPLIERVVT EECCCCCCCHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VTGNAVTKPGNYWTLIGSKVEDVLRHCDFREAEAQKIIMGGPMMGYTLANTQVPILKGSN HCCCCEECCCCEEEEECHHHHHHHHHCCCCHHCCCEEEECCCCCCEEECCCEEEEEECCC CLLLPNGLEITEMPPEKPCIRCGECAVACPASLLPQQLFWHAKAEEYDKAQSYNLKDCIE EEEECCCCEECCCCCCCCCHHCCCHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHH CGCCTYVCPSDIPLVEYYRVAKAAIRQQAEEKASAERAKVRFEARITRLEEEKAAREAKA CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KEAAEKRKAAMAGGEKDAIAAALARVQAKKAAQEQNAAPVAASPEGAQASAADPKAGVAA HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH AIARAKAKKTAQQEAAKSPDTAGSTVTDAASDLSIETTPEQESTPASSEDPKKAAVAAAI HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHH ARAKAKKAAQAANSNTAATDTANGNRQVSSLQEPKVQASAVQPPESQAQEQDPKRAAVAA HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHCCCCCHHHHHHCCHHHHHHHH AIAKAKAKKSARNTDESGLAVAEPSAPATGEAESAPADDKSARVAAAVAKAKAKKLAASA HHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC SDSPFPEDMAAIPEKNRSEASLVQTDESLPETRGDDKPDNKAARVAAAVAKAKAKAAARR CCCCCCHHHHHCCCCCCCCHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH EEAQPDPAVAEHIQSETSQAADADELETDIQAPEKSTLTDMATAMPPAANQIPEQGVHIA HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCCHHCCCCCCCEEE DSANTAASEVPPTDADTLKKARIAAAVAKAKAKKAAKEHE CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLTLLEQLDKGTLWRSPGGIHPPEMKSVSNGTAIATLPLFDEYLVPLPQVGEQAILAVKV CCHHHHHHCCCCEECCCCCCCCCCCCCCCCCCEEEEECCHHHHHCCCCCCCCCEEEEEEE GDTVLKGQMLTQGQGVGYLPVHAPTSGRVKAIESRPSNHASALPILTLALEADGQDKWCE CCHHHHCCCEECCCCCEEEEEECCCCCCEEEECCCCCCCCCCCEEEEEEEECCCCHHHHH LQSAALDALTPAQMVKRIQDAGIAGMGGAAFPSHIKLSPASEIELVIVNGVECEPYITAD HHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCCCEECCH DRLMREHADGIVAGIGIVHRILAPKRIIIAIEDNKPEAAEAMQAAVNRSQLPAGLVRVTV HHHHHHHHCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEE IPTKYPSGGEKQLIQIVTGQEVPSGAIPAQLGILVHNVGTLFAIRDAVIEGKPLIERVVT EECCCCCCCHHHEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH VTGNAVTKPGNYWTLIGSKVEDVLRHCDFREAEAQKIIMGGPMMGYTLANTQVPILKGSN HCCCCEECCCCEEEEECHHHHHHHHHCCCCHHCCCEEEECCCCCCEEECCCEEEEEECCC CLLLPNGLEITEMPPEKPCIRCGECAVACPASLLPQQLFWHAKAEEYDKAQSYNLKDCIE EEEECCCCEECCCCCCCCCHHCCCHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHHH CGCCTYVCPSDIPLVEYYRVAKAAIRQQAEEKASAERAKVRFEARITRLEEEKAAREAKA CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KEAAEKRKAAMAGGEKDAIAAALARVQAKKAAQEQNAAPVAASPEGAQASAADPKAGVAA HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH AIARAKAKKTAQQEAAKSPDTAGSTVTDAASDLSIETTPEQESTPASSEDPKKAAVAAAI HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHH ARAKAKKAAQAANSNTAATDTANGNRQVSSLQEPKVQASAVQPPESQAQEQDPKRAAVAA HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCHHHCCCCCHHHHHHCCHHHHHHHH AIAKAKAKKSARNTDESGLAVAEPSAPATGEAESAPADDKSARVAAAVAKAKAKKLAASA HHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC SDSPFPEDMAAIPEKNRSEASLVQTDESLPETRGDDKPDNKAARVAAAVAKAKAKAAARR CCCCCCHHHHHCCCCCCCCHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH EEAQPDPAVAEHIQSETSQAADADELETDIQAPEKSTLTDMATAMPPAANQIPEQGVHIA HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCCHHCCCCCCCEEE DSANTAASEVPPTDADTLKKARIAAAVAKAKAKKAAKEHE CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: 4Fe-4S clusters [C]
Metal ions: Iron-Sulfur [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]