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The map label for this gene is rnfB

Identifier: 119774966

GI number: 119774966

Start: 2230263

End: 2230832

Strand: Direct

Name: rnfB

Synonym: Sama_1831

Alternate gene names: 119774966

Gene position: 2230263-2230832 (Clockwise)

Preceding gene: 119774965

Following gene: 119774967

Centisome position: 51.79

GC content: 55.44

Gene sequence:

>570_bases
ATGTCAGCAGTCATGATAGCGGTTGTATTACTGGGCCTGCTGGCATTGGTATTTGGTGCCATATTGGGCTTTGCTGCCGT
CAAATTCAGAGTAGAAGGCGATCCGCTGGTGGACCAGGTCGAGTCCCTCTTGCCGCAAACTCAGTGCGGTCAGTGTGGCT
ATCCCGGTTGCCGCCCTTACGCCGAAGCCATCGCTGGCGGCGACCAAATCAACAAATGCCCCCCCGGTGGTACAGCCACC
ATGGAAAAGATTGCTGAGCTAATGGGCGTTGAACCTCAGCCACTGTCTGCCACCACTGAGCAGCAAGTCAAAAAAGTTGC
CTACATTCGTGAAGACGAGTGTATCGGCTGTACCAAGTGTATTCAGGCGTGTCCCGTGGATGCCATCGTCGGCGCCGGTA
AGCTGATGCACACCGTCATTACCCAGGACTGCACCGGCTGCGATCTCTGTGTCGAGCCCTGCCCTGTCGATTGCATCGAC
ATGCTCCCTGTCACTCAGGACATCAAGACCTGGAATTGGAAACTGAGTGCCATTCCCGTGATGCAGCTCGAAGAGGACAA
ACAGTGCTGA

Upstream 100 bases:

>100_bases
CAGCTGATGTGCCCATGCCTTTTCGGGGTGGCGCCATTGCCATGATCACCGCTGGCCTTATGTCTCTGGCCTTTATGGGC
TTTACCGGTTTGGTGAAATA

Downstream 100 bases:

>100_bases
CGCTTTTGGAACAATTGGATAAAGGTACGCTGTGGCGCTCACCCGGTGGCATTCACCCACCCGAGATGAAATCCGTCTCC
AATGGCACCGCTATCGCCAC

Product: electron transport complex protein RnfB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSAVMIAVVLLGLLALVFGAILGFAAVKFRVEGDPLVDQVESLLPQTQCGQCGYPGCRPYAEAIAGGDQINKCPPGGTAT
MEKIAELMGVEPQPLSATTEQQVKKVAYIREDECIGCTKCIQACPVDAIVGAGKLMHTVITQDCTGCDLCVEPCPVDCID
MLPVTQDIKTWNWKLSAIPVMQLEEDKQC

Sequences:

>Translated_189_residues
MSAVMIAVVLLGLLALVFGAILGFAAVKFRVEGDPLVDQVESLLPQTQCGQCGYPGCRPYAEAIAGGDQINKCPPGGTAT
MEKIAELMGVEPQPLSATTEQQVKKVAYIREDECIGCTKCIQACPVDAIVGAGKLMHTVITQDCTGCDLCVEPCPVDCID
MLPVTQDIKTWNWKLSAIPVMQLEEDKQC
>Mature_188_residues
SAVMIAVVLLGLLALVFGAILGFAAVKFRVEGDPLVDQVESLLPQTQCGQCGYPGCRPYAEAIAGGDQINKCPPGGTATM
EKIAELMGVEPQPLSATTEQQVKKVAYIREDECIGCTKCIQACPVDAIVGAGKLMHTVITQDCTGCDLCVEPCPVDCIDM
LPVTQDIKTWNWKLSAIPVMQLEEDKQC

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787915, Length=183, Percent_Identity=59.0163934426229, Blast_Score=228, Evalue=1e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFB_SHEAM (A1S6N0)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_927706.1
- ProteinModelPortal:   A1S6N0
- SMR:   A1S6N0
- STRING:   A1S6N0
- GeneID:   4604081
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_1831
- NMPDR:   fig|326297.7.peg.1723
- eggNOG:   COG2878
- HOGENOM:   HBG549899
- OMA:   KFKVEGD
- PhylomeDB:   A1S6N0
- ProtClustDB:   PRK05113
- GO:   GO:0006810
- HAMAP:   MF_00463
- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202
- PIRSF:   PIRSF005784
- TIGRFAMs:   TIGR01944

Pfam domain/function: PF00037 Fer4; PF04060 FeS

EC number: NA

Molecular weight: Translated: 20191; Mature: 20060

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
11.1 %Cys+Met (Translated Protein)
7.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
10.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAVMIAVVLLGLLALVFGAILGFAAVKFRVEGDPLVDQVESLLPQTQCGQCGYPGCRPY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHH
AEAIAGGDQINKCPPGGTATMEKIAELMGVEPQPLSATTEQQVKKVAYIREDECIGCTKC
HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHH
IQACPVDAIVGAGKLMHTVITQDCTGCDLCVEPCPVDCIDMLPVTQDIKTWNWKLSAIPV
HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHCCEEEECCEE
MQLEEDKQC
EECCCCCCC
>Mature Secondary Structure 
SAVMIAVVLLGLLALVFGAILGFAAVKFRVEGDPLVDQVESLLPQTQCGQCGYPGCRPY
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHH
AEAIAGGDQINKCPPGGTATMEKIAELMGVEPQPLSATTEQQVKKVAYIREDECIGCTKC
HHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHH
IQACPVDAIVGAGKLMHTVITQDCTGCDLCVEPCPVDCIDMLPVTQDIKTWNWKLSAIPV
HHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHCCEEEECCEE
MQLEEDKQC
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA