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The map label for this gene is hypC [H]

Identifier: 119774808

GI number: 119774808

Start: 2045010

End: 2045270

Strand: Reverse

Name: hypC [H]

Synonym: Sama_1672

Alternate gene names: 119774808

Gene position: 2045270-2045010 (Counterclockwise)

Preceding gene: 119774809

Following gene: 119774807

Centisome position: 47.5

GC content: 45.59

Gene sequence:

>261_bases
ATGTGCCTTTCTGTCCCTTCTGAAGTGGTGGCACTGCATGACGATGAGCAGGCCATTACCGTCGATACCCTGGGGGTACG
GCGAAAAGTCAGTCGTCATTTACTCAGCGATGAAATCCAAATCGGTGACTATGTGTTGATCCACATCGGCTTTGCGATGA
ATAAAATTGACAAAGAAGATGCTCTGGAGAGTCTTAAGCTTTATAAGGAAATTGTAGAAAAGCTGGAGGCAGAAAACCAT
GCCCAATCAAGCCATCAATGA

Upstream 100 bases:

>100_bases
ATTGTCTGTCAAGGATGGTCGCGGCATGGACAGGCTCGCAACCTGGTTAAAGCAGGACCACAGCAGCCGCTATCATGCCG
ACGTTGGGGGAAATTGAGTT

Downstream 100 bases:

>100_bases
ACCTGATTCATCACTAAAACTGAAGTCCCTTTATGAAGGGTTTCGTGATGCAGGGACCATTCGGGCGCTGGCCGCACGGA
TAAACAGCGCGGCCCAAAAT

Product: hydrogenase assembly chaperone hypC/hupF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 86; Mature: 86

Protein sequence:

>86_residues
MCLSVPSEVVALHDDEQAITVDTLGVRRKVSRHLLSDEIQIGDYVLIHIGFAMNKIDKEDALESLKLYKEIVEKLEAENH
AQSSHQ

Sequences:

>Translated_86_residues
MCLSVPSEVVALHDDEQAITVDTLGVRRKVSRHLLSDEIQIGDYVLIHIGFAMNKIDKEDALESLKLYKEIVEKLEAENH
AQSSHQ
>Mature_86_residues
MCLSVPSEVVALHDDEQAITVDTLGVRRKVSRHLLSDEIQIGDYVLIHIGFAMNKIDKEDALESLKLYKEIVEKLEAENH
AQSSHQ

Specific function: Required for production of hydrogenase [H]

COG id: COG0298

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupF/hypC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019812
- InterPro:   IPR001109 [H]

Pfam domain/function: PF01455 HupF_HypC [H]

EC number: NA

Molecular weight: Translated: 9712; Mature: 9712

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCLSVPSEVVALHDDEQAITVDTLGVRRKVSRHLLSDEIQIGDYVLIHIGFAMNKIDKED
CCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHCCHHH
ALESLKLYKEIVEKLEAENHAQSSHQ
HHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MCLSVPSEVVALHDDEQAITVDTLGVRRKVSRHLLSDEIQIGDYVLIHIGFAMNKIDKED
CCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHCCHHH
ALESLKLYKEIVEKLEAENHAQSSHQ
HHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12810954 [H]