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The map label for this gene is hypD2 [H]

Identifier: 119774807

GI number: 119774807

Start: 2043872

End: 2045032

Strand: Reverse

Name: hypD2 [H]

Synonym: Sama_1671

Alternate gene names: 119774807

Gene position: 2045032-2043872 (Counterclockwise)

Preceding gene: 119774808

Following gene: 119774806

Centisome position: 47.49

GC content: 56.85

Gene sequence:

>1161_bases
ATGCCCAATCAAGCCATCAATGAACCTGATTCATCACTAAAACTGAAGTCCCTTTATGAAGGGTTTCGTGATGCAGGGAC
CATTCGGGCGCTGGCCGCACGGATAAACAGCGCGGCCCAAAATCTCTCTGAGCCGCTGTACATCATGGAGGTGTGCGGTG
GCCATACCCACACCATCATGAAATACGGCCTGCTCGGCCTGATACCGGACAATGTGAAATTTATCCATGGTCCCGGCTGC
CCTGTTTGTGTGATGCCCAAAGAACGCATCGATCAGGCCATCGCCCTGGCTAAGATGGACGATGTCATACTGCTGACCCT
GGGCGACATGATCAGAGTCCCCGGCTCAAAAGGCAGCCTGGCACAGGCCAGAGCCAGTGGCGCTGATGTGCGCCCCCTGT
ACGATCCCCTGGATGCGCTTGCCATCGCCAGAGACAATCCCGACAAGACAGTGGTGTTTTTCGCCATTGGTTTTGAAACC
TCCACTCCCATGACCGCAGTGCTGCTTCAGCAAGCCGAGCACGCCGCCCTGCCCAACCTGCTGTTTCATATCAATCATGT
GCTGGTGCCCCCTGCCATCGATGCGGTGATGGCCGAGCCTGCCACCAAGGTGAATGCCTTTATCGGCCCTGCCCATGTGA
GCGTGATAAGTGGCGCCAAAATCTATCGCCGGGCGGCAGACGTGCACCATACCCCTGTGGTGGTCAGCGGTTTTGAACCC
GTGGATGTGATGGAATCCATTTTGCGATTGGTGGAGCTTAAAAATCTCACCGAATCCGTGGTTGACGTGCAGTACAGCCG
CGCGGTGTCTGAGGAAGGTAACCTGACCGCCCAGGCGTTGGTGGACGAGTACTTTGAAGTGCGTGACAGCTTCCGCTGGC
GCGGTCTGGGGCCCATTCCCCAGTCAGCCCTGAAACTCAAAGGCAAGTACGCCCACAGGGATGCCGAAATCCATTTTGGC
GGGCGTTTACCCGTTCAGGAAATCGACGATCACAAGGCCTGCCAGTGTGGTGACATTCTGCGTGGTCTTGCCAACCCCAT
GGACTGCAAAGTCTTTGGCCGTGGCTGCACGCCCCAAACGCCCCTTGGCAGTTGCATGGTCAGCTCAGAAGGCGCCTGCA
ATGCCTATTACCGCTACCATGGAGTCCAGCATGTCGACTAA

Upstream 100 bases:

>100_bases
ATCCACATCGGCTTTGCGATGAATAAAATTGACAAAGAAGATGCTCTGGAGAGTCTTAAGCTTTATAAGGAAATTGTAGA
AAAGCTGGAGGCAGAAAACC

Downstream 100 bases:

>100_bases
CAGTATTCAGCTTGCCCACGGTGGCGGCGGCCTGGAAATGAATAAACTCATTCGTAACCTGTTTTTCAAGGCCTTTGATA
ATTGCATCCTGAGAAATGAA

Product: hydrogenase expression/formation protein HypD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MPNQAINEPDSSLKLKSLYEGFRDAGTIRALAARINSAAQNLSEPLYIMEVCGGHTHTIMKYGLLGLIPDNVKFIHGPGC
PVCVMPKERIDQAIALAKMDDVILLTLGDMIRVPGSKGSLAQARASGADVRPLYDPLDALAIARDNPDKTVVFFAIGFET
STPMTAVLLQQAEHAALPNLLFHINHVLVPPAIDAVMAEPATKVNAFIGPAHVSVISGAKIYRRAADVHHTPVVVSGFEP
VDVMESILRLVELKNLTESVVDVQYSRAVSEEGNLTAQALVDEYFEVRDSFRWRGLGPIPQSALKLKGKYAHRDAEIHFG
GRLPVQEIDDHKACQCGDILRGLANPMDCKVFGRGCTPQTPLGSCMVSSEGACNAYYRYHGVQHVD

Sequences:

>Translated_386_residues
MPNQAINEPDSSLKLKSLYEGFRDAGTIRALAARINSAAQNLSEPLYIMEVCGGHTHTIMKYGLLGLIPDNVKFIHGPGC
PVCVMPKERIDQAIALAKMDDVILLTLGDMIRVPGSKGSLAQARASGADVRPLYDPLDALAIARDNPDKTVVFFAIGFET
STPMTAVLLQQAEHAALPNLLFHINHVLVPPAIDAVMAEPATKVNAFIGPAHVSVISGAKIYRRAADVHHTPVVVSGFEP
VDVMESILRLVELKNLTESVVDVQYSRAVSEEGNLTAQALVDEYFEVRDSFRWRGLGPIPQSALKLKGKYAHRDAEIHFG
GRLPVQEIDDHKACQCGDILRGLANPMDCKVFGRGCTPQTPLGSCMVSSEGACNAYYRYHGVQHVD
>Mature_385_residues
PNQAINEPDSSLKLKSLYEGFRDAGTIRALAARINSAAQNLSEPLYIMEVCGGHTHTIMKYGLLGLIPDNVKFIHGPGCP
VCVMPKERIDQAIALAKMDDVILLTLGDMIRVPGSKGSLAQARASGADVRPLYDPLDALAIARDNPDKTVVFFAIGFETS
TPMTAVLLQQAEHAALPNLLFHINHVLVPPAIDAVMAEPATKVNAFIGPAHVSVISGAKIYRRAADVHHTPVVVSGFEPV
DVMESILRLVELKNLTESVVDVQYSRAVSEEGNLTAQALVDEYFEVRDSFRWRGLGPIPQSALKLKGKYAHRDAEIHFGG
RLPVQEIDDHKACQCGDILRGLANPMDCKVFGRGCTPQTPLGSCMVSSEGACNAYYRYHGVQHVD

Specific function: Required For The Formation Of All Three Hydrogenase Isoenzymes. [C]

COG id: COG0409

COG function: function code O; Hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypD family [H]

Homologues:

Organism=Escherichia coli, GI1789084, Length=352, Percent_Identity=46.0227272727273, Blast_Score=335, Evalue=4e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002780 [H]

Pfam domain/function: PF01924 HypD [H]

EC number: NA

Molecular weight: Translated: 41884; Mature: 41752

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNQAINEPDSSLKLKSLYEGFRDAGTIRALAARINSAAQNLSEPLYIMEVCGGHTHTIM
CCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEHHCCCCHHHHH
KYGLLGLIPDNVKFIHGPGCPVCVMPKERIDQAIALAKMDDVILLTLGDMIRVPGSKGSL
HHHHHEECCCCCEEEECCCCCEEECCHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCCCH
AQARASGADVRPLYDPLDALAIARDNPDKTVVFFAIGFETSTPMTAVLLQQAEHAALPNL
HHHHCCCCCCCHHHHHHHHHHEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
LFHINHVLVPPAIDAVMAEPATKVNAFIGPAHVSVISGAKIYRRAADVHHTPVVVSGFEP
HHHHHHEECCCHHHHHHCCCCHHHHHEECHHHHHHHCCHHHHHHHHCCCCCCEEEECCCC
VDVMESILRLVELKNLTESVVDVQYSRAVSEEGNLTAQALVDEYFEVRDSFRWRGLGPIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
QSALKLKGKYAHRDAEIHFGGRLPVQEIDDHKACQCGDILRGLANPMDCKVFGRGCTPQT
HHHHHHCCHHCCCCCEEEECCCCCHHHCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCC
PLGSCMVSSEGACNAYYRYHGVQHVD
CCCCEEECCCCCCCHHHHHCCCCCCC
>Mature Secondary Structure 
PNQAINEPDSSLKLKSLYEGFRDAGTIRALAARINSAAQNLSEPLYIMEVCGGHTHTIM
CCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEEHHCCCCHHHHH
KYGLLGLIPDNVKFIHGPGCPVCVMPKERIDQAIALAKMDDVILLTLGDMIRVPGSKGSL
HHHHHEECCCCCEEEECCCCCEEECCHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCCCH
AQARASGADVRPLYDPLDALAIARDNPDKTVVFFAIGFETSTPMTAVLLQQAEHAALPNL
HHHHCCCCCCCHHHHHHHHHHEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
LFHINHVLVPPAIDAVMAEPATKVNAFIGPAHVSVISGAKIYRRAADVHHTPVVVSGFEP
HHHHHHEECCCHHHHHHCCCCHHHHHEECHHHHHHHCCHHHHHHHHCCCCCCEEEECCCC
VDVMESILRLVELKNLTESVVDVQYSRAVSEEGNLTAQALVDEYFEVRDSFRWRGLGPIP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
QSALKLKGKYAHRDAEIHFGGRLPVQEIDDHKACQCGDILRGLANPMDCKVFGRGCTPQT
HHHHHHCCHHCCCCCEEEECCCCCHHHCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCC
PLGSCMVSSEGACNAYYRYHGVQHVD
CCCCEEECCCCCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12597275; 8510650 [H]