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The map label for this gene is ycbZ [C]

Identifier: 119774743

GI number: 119774743

Start: 1962014

End: 1963744

Strand: Reverse

Name: ycbZ [C]

Synonym: Sama_1606

Alternate gene names: 119774743

Gene position: 1963744-1962014 (Counterclockwise)

Preceding gene: 119774748

Following gene: 119774742

Centisome position: 45.6

GC content: 52.74

Gene sequence:

>1731_bases
ATGCACCCATCTTTGATTGCCGCTGAGCGGCTTAGCCCTGCCTTTCATCTTCCCACTGGCCTGCCAGACAATCCCGGTCT
CGGACATTTGCTGCTATGTCAGGACAGACTCCTTGACGCTTTCACCCTGGCAAGTCAAATTCCATCCCAGCACTTATTTT
TGGCCGATTTTCCAGGCGTGCACCGGGAGTCATTGTTTAAAGCGCTGGCACAAGCGGCACCAGTCCCGCCAAGAGAGCTG
GTTGCGCGACGTCACGAAGCCGGCACTCAACTGGTTTGGGAAACCGCCCGCCAAGGCGAGCACGGCTCACTCGCCCGCGA
GCATGGATTTTTCACCGTGCTGGGGCACCAGATAAAGCGCGCCGATTTATTGGGCAACATGGTTGAAGACAGCAACGGCA
AGGCACAATACCGCCCCGGAGCCCTCGCCAGTTATCCCTATATCTTTATCTGCGTAGAAGCACTCTATCGCCGGGAAGGC
CTGTGGCAAGTCTTGTTGGACGTGCTCGACAAAGGCTACTACCGCGTTGGTAAAGACATGAACATCCCGCTGCAATCGAC
CATCATCCTGGTTGGCAGTGCACTGCAGTATTCTGAACTGCGCGCCCATGACAGCAGCTTCAGCCGCCATTTTCCCCTGC
TGGGTGAAATGGCCCACGAGCTCAATCTGACGGTCAAGTCCGAAAAAGAGTATGGTCTTTGGTTAAAAGCCCTCGCTCAC
GAAGGCGGCTACCAACTTGACGACTCCGCAATGGCTCCCCTCTTCAACTTTGCAGCAAGAGAATGTGAACATCAGCAGCG
TCTGTCACTCTCTGGTCAGGACTTGGTACAACTGTTCGCCCAGGCCGCAGTATATGGTCGCTCTGGCAGACTGGATGCGA
ATGCCATCGACAAGGCCATTAAGCAACTTACCCGCCGTCACAACAGCTCAGAACGCTTCTCTGCCCAGAGTTTCGATGAC
AGTTTTATCAACCTCCCCACTGACGGAGAAATGATTGGCCAGATTAATGGCCTCACTGTTATCGACAGTGTTGACTATGC
CTATGGTGAGCCAGCACGAATAACCGCAACTGTGCACTATGGTGACGGTGAAGTCGCCGATATTGAACGCAAATCAGAAC
TCGGCGGCAATATCCATGCGAAAGGCATGATGATCCTTTCAGCTTGCCTGTATCGTATTTTTGGTCGTGATGCACCGCTT
CACCTGAATGCCAACATAGTATTCGAGCAGTCATATCAGGAGATTGATGGCGATAGCGCCTCCCTTGCGGAGTATTGCTG
TTTAATGTCTGCTATTGCAGAGCAGCCAATAAAACAATCACTTGCCGTAACAGGTGCGCTCGACCAGTTTGGCAATGTGC
AGGCAATTGGCGGTGTTAACGAGAAAATTGAAGGCTTTTTCAATCTGTGTGAACGTCGAGGTCTCACGGGCGAACAAGGG
GTCATCATCCCCAGGGCCAACATGTTGCAGCTGAACCTCGATAAAAAAGTGATAGACGCCGTATCCAAGGGACTGTTCCA
CATCTATCAGGTCGCGCACATGGACGAAGCGGTAGAGATGTTGATGGCGCTACCTGCTGGCAAGGCCGATGAAGAGCATA
ACTTCCCTGAGAATACGCTCTATGGCCTGGTTCAGACCAGATTGGATAAACTGGCGGGTGATGAGCCTCTGGACGAACCA
GAGGGGTTCTTTGCTTCTCTGCTCGCAAAATGGCCATTTTCCAGAGCCTAA

Upstream 100 bases:

>100_bases
GCAAAGCAGAAATAACCCTCGTTTCGGGCTCACAAGAGACTGATAACAAGCGGCAAGGATATGCTAAAATCCGCCCAACG
ATGATTTTTCAACAACTTTT

Downstream 100 bases:

>100_bases
ATCGGTGGTTGGACTTGTTTGGCGTACAGGTGTTCGCTAATCTTTGGCACTCTTAATGATGGAGTGGTAACTATTACAAT
GACTAAAGCAAACAGCTACA

Product: ATP-dependent protease

Products: NA

Alternate protein names: ATP-dependent protease La homolog [H]

Number of amino acids: Translated: 576; Mature: 576

Protein sequence:

>576_residues
MHPSLIAAERLSPAFHLPTGLPDNPGLGHLLLCQDRLLDAFTLASQIPSQHLFLADFPGVHRESLFKALAQAAPVPPREL
VARRHEAGTQLVWETARQGEHGSLAREHGFFTVLGHQIKRADLLGNMVEDSNGKAQYRPGALASYPYIFICVEALYRREG
LWQVLLDVLDKGYYRVGKDMNIPLQSTIILVGSALQYSELRAHDSSFSRHFPLLGEMAHELNLTVKSEKEYGLWLKALAH
EGGYQLDDSAMAPLFNFAARECEHQQRLSLSGQDLVQLFAQAAVYGRSGRLDANAIDKAIKQLTRRHNSSERFSAQSFDD
SFINLPTDGEMIGQINGLTVIDSVDYAYGEPARITATVHYGDGEVADIERKSELGGNIHAKGMMILSACLYRIFGRDAPL
HLNANIVFEQSYQEIDGDSASLAEYCCLMSAIAEQPIKQSLAVTGALDQFGNVQAIGGVNEKIEGFFNLCERRGLTGEQG
VIIPRANMLQLNLDKKVIDAVSKGLFHIYQVAHMDEAVEMLMALPAGKADEEHNFPENTLYGLVQTRLDKLAGDEPLDEP
EGFFASLLAKWPFSRA

Sequences:

>Translated_576_residues
MHPSLIAAERLSPAFHLPTGLPDNPGLGHLLLCQDRLLDAFTLASQIPSQHLFLADFPGVHRESLFKALAQAAPVPPREL
VARRHEAGTQLVWETARQGEHGSLAREHGFFTVLGHQIKRADLLGNMVEDSNGKAQYRPGALASYPYIFICVEALYRREG
LWQVLLDVLDKGYYRVGKDMNIPLQSTIILVGSALQYSELRAHDSSFSRHFPLLGEMAHELNLTVKSEKEYGLWLKALAH
EGGYQLDDSAMAPLFNFAARECEHQQRLSLSGQDLVQLFAQAAVYGRSGRLDANAIDKAIKQLTRRHNSSERFSAQSFDD
SFINLPTDGEMIGQINGLTVIDSVDYAYGEPARITATVHYGDGEVADIERKSELGGNIHAKGMMILSACLYRIFGRDAPL
HLNANIVFEQSYQEIDGDSASLAEYCCLMSAIAEQPIKQSLAVTGALDQFGNVQAIGGVNEKIEGFFNLCERRGLTGEQG
VIIPRANMLQLNLDKKVIDAVSKGLFHIYQVAHMDEAVEMLMALPAGKADEEHNFPENTLYGLVQTRLDKLAGDEPLDEP
EGFFASLLAKWPFSRA
>Mature_576_residues
MHPSLIAAERLSPAFHLPTGLPDNPGLGHLLLCQDRLLDAFTLASQIPSQHLFLADFPGVHRESLFKALAQAAPVPPREL
VARRHEAGTQLVWETARQGEHGSLAREHGFFTVLGHQIKRADLLGNMVEDSNGKAQYRPGALASYPYIFICVEALYRREG
LWQVLLDVLDKGYYRVGKDMNIPLQSTIILVGSALQYSELRAHDSSFSRHFPLLGEMAHELNLTVKSEKEYGLWLKALAH
EGGYQLDDSAMAPLFNFAARECEHQQRLSLSGQDLVQLFAQAAVYGRSGRLDANAIDKAIKQLTRRHNSSERFSAQSFDD
SFINLPTDGEMIGQINGLTVIDSVDYAYGEPARITATVHYGDGEVADIERKSELGGNIHAKGMMILSACLYRIFGRDAPL
HLNANIVFEQSYQEIDGDSASLAEYCCLMSAIAEQPIKQSLAVTGALDQFGNVQAIGGVNEKIEGFFNLCERRGLTGEQG
VIIPRANMLQLNLDKKVIDAVSKGLFHIYQVAHMDEAVEMLMALPAGKADEEHNFPENTLYGLVQTRLDKLAGDEPLDEP
EGFFASLLAKWPFSRA

Specific function: Unknown

COG id: COG1067

COG function: function code O; Predicted ATP-dependent protease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S16 family [H]

Homologues:

Organism=Escherichia coli, GI1787188, Length=413, Percent_Identity=36.0774818401937, Blast_Score=240, Evalue=2e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008269
- InterPro:   IPR008268
- InterPro:   IPR001984
- InterPro:   IPR020568 [H]

Pfam domain/function: PF05362 Lon_C [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 63644; Mature: 63644

Theoretical pI: Translated: 5.44; Mature: 5.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHPSLIAAERLSPAFHLPTGLPDNPGLGHLLLCQDRLLDAFTLASQIPSQHLFLADFPGV
CCCCHHHHHHCCCCEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEECCCCC
HRESLFKALAQAAPVPPRELVARRHEAGTQLVWETARQGEHGSLAREHGFFTVLGHQIKR
CHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHCCCCEEHHHHHHH
ADLLGNMVEDSNGKAQYRPGALASYPYIFICVEALYRREGLWQVLLDVLDKGYYRVGKDM
HHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCCC
NIPLQSTIILVGSALQYSELRAHDSSFSRHFPLLGEMAHELNLTVKSEKEYGLWLKALAH
CCCHHHHHEEHCCCHHHHHHHHCCCHHHHCCCHHHHHHHHHCCEEECCCHHHHHHHHHHH
EGGYQLDDSAMAPLFNFAARECEHQQRLSLSGQDLVQLFAQAAVYGRSGRLDANAIDKAI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
KQLTRRHNSSERFSAQSFDDSFINLPTDGEMIGQINGLTVIDSVDYAYGEPARITATVHY
HHHHHHCCCCHHCCCCCCCCCEEECCCCCHHHHCCCCEEEEECCCCCCCCCCEEEEEEEC
GDGEVADIERKSELGGNIHAKGMMILSACLYRIFGRDAPLHLNANIVFEQSYQEIDGDSA
CCCCEECCHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCCEEECCEEEEECCHHHCCCCHH
SLAEYCCLMSAIAEQPIKQSLAVTGALDQFGNVQAIGGVNEKIEGFFNLCERRGLTGEQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCC
VIIPRANMLQLNLDKKVIDAVSKGLFHIYQVAHMDEAVEMLMALPAGKADEEHNFPENTL
EEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
YGLVQTRLDKLAGDEPLDEPEGFFASLLAKWPFSRA
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MHPSLIAAERLSPAFHLPTGLPDNPGLGHLLLCQDRLLDAFTLASQIPSQHLFLADFPGV
CCCCHHHHHHCCCCEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEECCCCC
HRESLFKALAQAAPVPPRELVARRHEAGTQLVWETARQGEHGSLAREHGFFTVLGHQIKR
CHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHCCCCEEHHHHHHH
ADLLGNMVEDSNGKAQYRPGALASYPYIFICVEALYRREGLWQVLLDVLDKGYYRVGKDM
HHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCEECCCCC
NIPLQSTIILVGSALQYSELRAHDSSFSRHFPLLGEMAHELNLTVKSEKEYGLWLKALAH
CCCHHHHHEEHCCCHHHHHHHHCCCHHHHCCCHHHHHHHHHCCEEECCCHHHHHHHHHHH
EGGYQLDDSAMAPLFNFAARECEHQQRLSLSGQDLVQLFAQAAVYGRSGRLDANAIDKAI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
KQLTRRHNSSERFSAQSFDDSFINLPTDGEMIGQINGLTVIDSVDYAYGEPARITATVHY
HHHHHHCCCCHHCCCCCCCCCEEECCCCCHHHHCCCCEEEEECCCCCCCCCCEEEEEEEC
GDGEVADIERKSELGGNIHAKGMMILSACLYRIFGRDAPLHLNANIVFEQSYQEIDGDSA
CCCCEECCHHHHHCCCCEEHHHHHHHHHHHHHHHCCCCCEEECCEEEEECCHHHCCCCHH
SLAEYCCLMSAIAEQPIKQSLAVTGALDQFGNVQAIGGVNEKIEGFFNLCERRGLTGEQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCCC
VIIPRANMLQLNLDKKVIDAVSKGLFHIYQVAHMDEAVEMLMALPAGKADEEHNFPENTL
EEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
YGLVQTRLDKLAGDEPLDEPEGFFASLLAKWPFSRA
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]