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The map label for this gene is hup2 [H]

Identifier: 119774748

GI number: 119774748

Start: 1969782

End: 1970057

Strand: Reverse

Name: hup2 [H]

Synonym: Sama_1611

Alternate gene names: 119774748

Gene position: 1970057-1969782 (Counterclockwise)

Preceding gene: 119774752

Following gene: 119774743

Centisome position: 45.75

GC content: 53.99

Gene sequence:

>276_bases
ATGAACAAAGCCACACTGACAAAGTTCATCGCCAACACCACAGGCGTCAGCCAACCCGAAGCCAAACGCCAGCTTGAGCA
AATTCTGGCATCGATTCGTCAAGCTCTGGAAGAAGGAGAAACCCTCTATCTGCCTCAGTTCGGCACCTTCGAACTGCGCT
ACCACCTGCCCCGTCAGGTACGCAACCCCAAGACAGGGGAATTGATGGAGGTCGCTGGGTTCAACCAACCAAGTTTTAAA
CCTGCGCCAGCTCTTAAGCAGCTAATCGCGGGCTGA

Upstream 100 bases:

>100_bases
AACCGGCCAAGGATCAATGTTTTGCGCTTGAAGATCATTTTCAAGCTGCTATAACTGACCGCTTTTTTACAGATCTTTCT
TTGAGGTCCATGGAGCGCCC

Downstream 100 bases:

>100_bases
TAGGCCCATTTGCGATTTGTTGTTGGCCAACGGCACCTCATACTCTGAGCGAACATAATCTATATGAGCACGCTGCGCGG
CTTCGCCTGAGCTCAGCATC

Product: HU family DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQVRNPKTGELMEVAGFNQPSFK
PAPALKQLIAG

Sequences:

>Translated_91_residues
MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQVRNPKTGELMEVAGFNQPSFK
PAPALKQLIAG
>Mature_91_residues
MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQVRNPKTGELMEVAGFNQPSFK
PAPALKQLIAG

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1786644, Length=89, Percent_Identity=38.2022471910112, Blast_Score=72, Evalue=7e-15,
Organism=Escherichia coli, GI1790433, Length=89, Percent_Identity=39.3258426966292, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1788005, Length=89, Percent_Identity=35.9550561797753, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10170; Mature: 10170

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQV
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEHEECCHHHH
RNPKTGELMEVAGFNQPSFKPAPALKQLIAG
CCCCCCCCHHHCCCCCCCCCCCHHHHHHHCC
>Mature Secondary Structure
MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQV
CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEHEECCHHHH
RNPKTGELMEVAGFNQPSFKPAPALKQLIAG
CCCCCCCCHHHCCCCCCCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]