| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774736
Identifier: 119774736
GI number: 119774736
Start: 1952808
End: 1953380
Strand: Direct
Name: 119774736
Synonym: Sama_1599
Alternate gene names: NA
Gene position: 1952808-1953380 (Clockwise)
Preceding gene: 119774735
Following gene: 119774737
Centisome position: 45.35
GC content: 52.71
Gene sequence:
>573_bases ATGACGCCTGTGTCTAAGATGATGACGAGATCATCATGGATAACATCACTTACGCTCGCCGCGGTATTGGGGCTCGTTTT GCCCAGTGCCATTGCCAATGAATTTCGCAGCGGCCCGGTTATTCAGGGCTACGGTGAGGTGGCCAGCCGGGTTAAGCAAA CCTACCCTATACCCAAGGATCAACGCTTTAAAGTGGTCTTTGACTTGGCGGCTCAAAGTGAAGAGGGCAAGATAAATCGT ACCATGGATAGCCTGGCACGTTTTATCAACATGCATGCTGCAGCAGGGGTTGATCCCAACAATATTCAGCTTGCCCTGGT GGTCCATGGCAAGGCGGTGTTTGACGTACTGTCTGACGATGCGCATTTCAAAAAGCTCGCCCGTGGCAATGCCCAGGCAA AGCTGCTCAAGGCGCTCATGGATAACGGCGTTCGGGTTATGGTATGTGGCCAAACGGCTGCCCATTTGGGCGTAGATAAC AACATGCTGCTCCCGGGAGTCGAAATGTCCCTGTCAGCCATGTCGGCCCATGCAATACTCGCGCAGCAGGGTTATAGTCA GAATCCATTCTGA
Upstream 100 bases:
>100_bases ATCTCATTGATGTTAATCATGTTCTAAACTTGAGTCCTCCCTTTGCCTGTGTCAGACTCAAGTTTGATTCACAAAAGCAT AACATTAATAGGGAGGCAAC
Downstream 100 bases:
>100_bases GGAATGACCAAATTACAGAACACCGGCTTTTGCCGGTGTTTTATTTTGTGGCAAAGATAAAAACGGCGAACGCGGGATCG CCTAAGGCGCCCTAAAAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: Methyltransferase Type
Number of amino acids: Translated: 190; Mature: 189
Protein sequence:
>190_residues MTPVSKMMTRSSWITSLTLAAVLGLVLPSAIANEFRSGPVIQGYGEVASRVKQTYPIPKDQRFKVVFDLAAQSEEGKINR TMDSLARFINMHAAAGVDPNNIQLALVVHGKAVFDVLSDDAHFKKLARGNAQAKLLKALMDNGVRVMVCGQTAAHLGVDN NMLLPGVEMSLSAMSAHAILAQQGYSQNPF
Sequences:
>Translated_190_residues MTPVSKMMTRSSWITSLTLAAVLGLVLPSAIANEFRSGPVIQGYGEVASRVKQTYPIPKDQRFKVVFDLAAQSEEGKINR TMDSLARFINMHAAAGVDPNNIQLALVVHGKAVFDVLSDDAHFKKLARGNAQAKLLKALMDNGVRVMVCGQTAAHLGVDN NMLLPGVEMSLSAMSAHAILAQQGYSQNPF >Mature_189_residues TPVSKMMTRSSWITSLTLAAVLGLVLPSAIANEFRSGPVIQGYGEVASRVKQTYPIPKDQRFKVVFDLAAQSEEGKINRT MDSLARFINMHAAAGVDPNNIQLALVVHGKAVFDVLSDDAHFKKLARGNAQAKLLKALMDNGVRVMVCGQTAAHLGVDNN MLLPGVEMSLSAMSAHAILAQQGYSQNPF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20451; Mature: 20320
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPVSKMMTRSSWITSLTLAAVLGLVLPSAIANEFRSGPVIQGYGEVASRVKQTYPIPKD CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHCCCCCC QRFKVVFDLAAQSEEGKINRTMDSLARFINMHAAAGVDPNNIQLALVVHGKAVFDVLSDD CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHCCC AHFKKLARGNAQAKLLKALMDNGVRVMVCGQTAAHLGVDNNMLLPGVEMSLSAMSAHAIL HHHHHHHCCCHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCEECCCCHHHHHHHHHHHHH AQQGYSQNPF HHCCCCCCCC >Mature Secondary Structure TPVSKMMTRSSWITSLTLAAVLGLVLPSAIANEFRSGPVIQGYGEVASRVKQTYPIPKD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHCCCCCC QRFKVVFDLAAQSEEGKINRTMDSLARFINMHAAAGVDPNNIQLALVVHGKAVFDVLSDD CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHCCC AHFKKLARGNAQAKLLKALMDNGVRVMVCGQTAAHLGVDNNMLLPGVEMSLSAMSAHAIL HHHHHHHCCCHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCEECCCCHHHHHHHHHHHHH AQQGYSQNPF HHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA