Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774649

Identifier: 119774649

GI number: 119774649

Start: 1836134

End: 1838500

Strand: Reverse

Name: 119774649

Synonym: Sama_1512

Alternate gene names: NA

Gene position: 1838500-1836134 (Counterclockwise)

Preceding gene: 119774650

Following gene: 119774645

Centisome position: 42.69

GC content: 54.71

Gene sequence:

>2367_bases
ATGACAAGAACAGTCTCTATGAAACCCTTTCGTTTCCCTTTAGCCCCCGGTTTGGCGCTGCTGTTTGCTTTATCCCCTCA
AATCAGCTTCGCCGGCAGTGCCAGTCAATTTGATATACGCATTCCTTCTCTCACCACAGAGGCACAGATTGACGGCGACC
TCAGCGACCCTGTTTGGCAGCAGGCATCCAGCACTTATCTGACATTCGAAACCCGTCCGGCCGAAAATGCCCCCGCAACC
GTGCAAACCCAGGCATGGGTATATGCCACAGACTCCACCCTGTATGTGGCATTCAAGGCTGACGATCCCTACCCGGGCAA
CATCCGGGCCCACTTACGCCCCAGAGATGATATCTGGGGCGATGACATGGTCGGTATCAAGCTGGATACCTTTAACAATG
CCCGTCTTGCCTATCAGTTTTTTATCAATCCGCTGGGGGTGCAGCTCGACTCCATAGAAAATGAGCTCAATAAGACTGAA
AGTGCTGCCTGGGATGGCATCTGGCAAAGCGCCGGGCAAATCACAGACACAGGTTATCAGGTAGAAGTGGCTATTCCGCT
GTCGCAATTGAGTTTTGACGACAGCCCCGGTGACAAAACCTGGGGATTTGAGCTCATCCGTTTTCATCCCAGAGACGCCG
AACGCAGACTATCTACCCACGCCATTTCGCGGCAAAACAGCTGTCAATTATGCCAGCTTGGTGTGGCGAGCGGGTTGGCC
ACCGTCAACCTCGGCAACGGGCTTCAGGTGACGCCTTCTCTGGTGGCCAAGGGCCACAGAGACCGGGGGCAAGCCCCCGG
CAGTGAGTGGCAGGATAATCAGGATGTGGATGTGGGTGCAGACCTTCGCTGGGCGCTCAGCCCGTCCTCTTTGCTCAACG
CCACCCTGAATCCGGATTTTTCACAAGTGGAAGCCGATGCCGGCCAGCTGGACGTCAACTCGAGTTTCGCCCTGTTTTTT
GAAGAAAAGCGCAGTTTTTTCCTTGATAATAAAGAGTATTTCGACTCTCAGGTCTCACTGCTGCATACCCGCAATCTGGT
TGACCCGGATTATGGGGTAAAATTTACCCACAAGTCAGAGGCACACACCTTTGCATTTTTGGGTGCCAACGACAGCGCCA
GCCACTTTCTGGTGCCCGGAAACCTGGGCTCCTCAGTCGCCACTATCGACAGCGAGAGCCACAACCTTGCCGGCCGATAC
CTCTACACCAGCAGCGAAGCCCTGGCCGTGGGTGCTGTCATCACCGGCAAGCGCAGCGACGATTACCATAATCTGGTGGT
GTCGGCGGATATCAAATACCAGCCAACAGCTCAGGACACCTTTATCGGCCAGTTTGCCAGTTCAGACACCCAGTATCCCT
TGGATTTGTATCGGGATTTTTGTCACTCGGATGAGGATTGTCTACCGGCGGATAGCTGCAATTTCAACGACTGCGAACTC
AATGAACAGGTACTCAGAACCCATAAAGACGGTACGTTTCGGGGCGAGATGTATCGCCTTGGCTATAAGCATGCGACCCG
CGACTACTACCTCAAGGCCGATTATGAGTCGGTGGGTGACGATTTTCGCGCCGATCTGGGCTTTATCGAGAAAGTCGACC
AACGTAAAGCCGTGCTGGGCGGCGGCTATATCTGGTACCCCACCGACAGCTGGTTCAACGAAATTGAGCTCGGCGGTGAC
TGGGATATCACCCAAAACCAGAATGGCGAGAAAATCGAGCAGGAGCTCGAAGGCTGGCTCTCGGCTGAAGGTGGCTGGCA
AAGCTGGATCGGCGGTGGCTGGTTAACCCGCGAAAAGGTGGGGCGCCGTCTCGATGCGAGTTCCCTCGCCATTGACGGCA
ATACCACCCTGTTTGACGAAACCCGCGTTTGGGCTGAAGCCAGCGCTCATCCTCTTTCGTGGGTTGGCGGCGGCCTGGCC
GCGTCCTGGGGCGACGAAGTTGACCTGCAAAACAACCGCCTGGGTAGCAGCCTGCGGGCCAGCGGTGAGCTTGAGCTCAA
GCTCACCGACGGTCTGGTGTTTGAAGCAAGCCACGCTTACTATGCCCTCGATGTGGACGAAGGACGGCTCATCACCGCCA
ATCTCACGGACGTGCGCATCAACTGGCAGCTGAGCGTAGAAAGTTTCATCAGATTTTCAGGGATTTATACCCATATCCGT
CGAGACCCCGGGCTGTACCTTTATCACACCCCGGATAACCTCAGCAAAGATTTGGGCACAGAACTGCTGTATGGCTATAA
GCTCAACCCACTCAGTGTGTTTTATCTTGGATATGCTGACGGCATGCGGGCTGACGACCGTTGGCCGGGTTTGACCCGTA
CCGAACAATCGCTGTTTATGAAAATGAGTTACGCGTTTATTTTGTAA

Upstream 100 bases:

>100_bases
AAACGCCCGCTTCTATGCGGGCGTTTTATTTCCATTCAGAATTTGTAACAAATCCACCTACATAGCGACCTTCAGCTGAG
TTACACTCGCCCACAAAATA

Downstream 100 bases:

>100_bases
CTACCAGAAGGGTATGACAAAGCGCAGCATGGTTTATCTGCTGCGCTTTCATGTTCTCTGCTGCGCTTTCATGTTCTCAG
CGGCGCTTGCAAAATTGATT

Product: hypothetical protein

Products: NA

Alternate protein names: Secreted Protein

Number of amino acids: Translated: 788; Mature: 787

Protein sequence:

>788_residues
MTRTVSMKPFRFPLAPGLALLFALSPQISFAGSASQFDIRIPSLTTEAQIDGDLSDPVWQQASSTYLTFETRPAENAPAT
VQTQAWVYATDSTLYVAFKADDPYPGNIRAHLRPRDDIWGDDMVGIKLDTFNNARLAYQFFINPLGVQLDSIENELNKTE
SAAWDGIWQSAGQITDTGYQVEVAIPLSQLSFDDSPGDKTWGFELIRFHPRDAERRLSTHAISRQNSCQLCQLGVASGLA
TVNLGNGLQVTPSLVAKGHRDRGQAPGSEWQDNQDVDVGADLRWALSPSSLLNATLNPDFSQVEADAGQLDVNSSFALFF
EEKRSFFLDNKEYFDSQVSLLHTRNLVDPDYGVKFTHKSEAHTFAFLGANDSASHFLVPGNLGSSVATIDSESHNLAGRY
LYTSSEALAVGAVITGKRSDDYHNLVVSADIKYQPTAQDTFIGQFASSDTQYPLDLYRDFCHSDEDCLPADSCNFNDCEL
NEQVLRTHKDGTFRGEMYRLGYKHATRDYYLKADYESVGDDFRADLGFIEKVDQRKAVLGGGYIWYPTDSWFNEIELGGD
WDITQNQNGEKIEQELEGWLSAEGGWQSWIGGGWLTREKVGRRLDASSLAIDGNTTLFDETRVWAEASAHPLSWVGGGLA
ASWGDEVDLQNNRLGSSLRASGELELKLTDGLVFEASHAYYALDVDEGRLITANLTDVRINWQLSVESFIRFSGIYTHIR
RDPGLYLYHTPDNLSKDLGTELLYGYKLNPLSVFYLGYADGMRADDRWPGLTRTEQSLFMKMSYAFIL

Sequences:

>Translated_788_residues
MTRTVSMKPFRFPLAPGLALLFALSPQISFAGSASQFDIRIPSLTTEAQIDGDLSDPVWQQASSTYLTFETRPAENAPAT
VQTQAWVYATDSTLYVAFKADDPYPGNIRAHLRPRDDIWGDDMVGIKLDTFNNARLAYQFFINPLGVQLDSIENELNKTE
SAAWDGIWQSAGQITDTGYQVEVAIPLSQLSFDDSPGDKTWGFELIRFHPRDAERRLSTHAISRQNSCQLCQLGVASGLA
TVNLGNGLQVTPSLVAKGHRDRGQAPGSEWQDNQDVDVGADLRWALSPSSLLNATLNPDFSQVEADAGQLDVNSSFALFF
EEKRSFFLDNKEYFDSQVSLLHTRNLVDPDYGVKFTHKSEAHTFAFLGANDSASHFLVPGNLGSSVATIDSESHNLAGRY
LYTSSEALAVGAVITGKRSDDYHNLVVSADIKYQPTAQDTFIGQFASSDTQYPLDLYRDFCHSDEDCLPADSCNFNDCEL
NEQVLRTHKDGTFRGEMYRLGYKHATRDYYLKADYESVGDDFRADLGFIEKVDQRKAVLGGGYIWYPTDSWFNEIELGGD
WDITQNQNGEKIEQELEGWLSAEGGWQSWIGGGWLTREKVGRRLDASSLAIDGNTTLFDETRVWAEASAHPLSWVGGGLA
ASWGDEVDLQNNRLGSSLRASGELELKLTDGLVFEASHAYYALDVDEGRLITANLTDVRINWQLSVESFIRFSGIYTHIR
RDPGLYLYHTPDNLSKDLGTELLYGYKLNPLSVFYLGYADGMRADDRWPGLTRTEQSLFMKMSYAFIL
>Mature_787_residues
TRTVSMKPFRFPLAPGLALLFALSPQISFAGSASQFDIRIPSLTTEAQIDGDLSDPVWQQASSTYLTFETRPAENAPATV
QTQAWVYATDSTLYVAFKADDPYPGNIRAHLRPRDDIWGDDMVGIKLDTFNNARLAYQFFINPLGVQLDSIENELNKTES
AAWDGIWQSAGQITDTGYQVEVAIPLSQLSFDDSPGDKTWGFELIRFHPRDAERRLSTHAISRQNSCQLCQLGVASGLAT
VNLGNGLQVTPSLVAKGHRDRGQAPGSEWQDNQDVDVGADLRWALSPSSLLNATLNPDFSQVEADAGQLDVNSSFALFFE
EKRSFFLDNKEYFDSQVSLLHTRNLVDPDYGVKFTHKSEAHTFAFLGANDSASHFLVPGNLGSSVATIDSESHNLAGRYL
YTSSEALAVGAVITGKRSDDYHNLVVSADIKYQPTAQDTFIGQFASSDTQYPLDLYRDFCHSDEDCLPADSCNFNDCELN
EQVLRTHKDGTFRGEMYRLGYKHATRDYYLKADYESVGDDFRADLGFIEKVDQRKAVLGGGYIWYPTDSWFNEIELGGDW
DITQNQNGEKIEQELEGWLSAEGGWQSWIGGGWLTREKVGRRLDASSLAIDGNTTLFDETRVWAEASAHPLSWVGGGLAA
SWGDEVDLQNNRLGSSLRASGELELKLTDGLVFEASHAYYALDVDEGRLITANLTDVRINWQLSVESFIRFSGIYTHIRR
DPGLYLYHTPDNLSKDLGTELLYGYKLNPLSVFYLGYADGMRADDRWPGLTRTEQSLFMKMSYAFIL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 87851; Mature: 87720

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTVSMKPFRFPLAPGLALLFALSPQISFAGSASQFDIRIPSLTTEAQIDGDLSDPVWQ
CCCEECCCCCCCCCCHHHHHHHHCCCCEEECCCCCEEEEECCCCCCCEECCCCCCCHHHH
QASSTYLTFETRPAENAPATVQTQAWVYATDSTLYVAFKADDPYPGNIRAHLRPRDDIWG
CCCCEEEEEECCCCCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCEEEEECCCCCCCC
DDMVGIKLDTFNNARLAYQFFINPLGVQLDSIENELNKTESAAWDGIWQSAGQITDTGYQ
CCEEEEEEECCCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCEECCCEE
VEVAIPLSQLSFDDSPGDKTWGFELIRFHPRDAERRLSTHAISRQNSCQLCQLGVASGLA
EEEEEEHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEHHHHCCEE
TVNLGNGLQVTPSLVAKGHRDRGQAPGSEWQDNQDVDVGADLRWALSPSSLLNATLNPDF
EEECCCCCEECHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHEECCCCCH
SQVEADAGQLDVNSSFALFFEEKRSFFLDNKEYFDSQVSLLHTRNLVDPDYGVKFTHKSE
HHHHCCCCEEECCCCEEEEEECCCHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
AHTFAFLGANDSASHFLVPGNLGSSVATIDSESHNLAGRYLYTSSEALAVGAVITGKRSD
CEEEEEEECCCCCCEEEEECCCCCCEEEECCCCCCCEEEEEEECCCCEEEEEEEECCCCC
DYHNLVVSADIKYQPTAQDTFIGQFASSDTQYPLDLYRDFCHSDEDCLPADSCNFNDCEL
CCCEEEEEECEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
NEQVLRTHKDGTFRGEMYRLGYKHATRDYYLKADYESVGDDFRADLGFIEKVDQRKAVLG
CHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECHHHHCCHHHHHHHHHHHHHHHHHEEC
GGYIWYPTDSWFNEIELGGDWDITQNQNGEKIEQELEGWLSAEGGWQSWIGGGWLTREKV
CCEEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCEEEHHHH
GRRLDASSLAIDGNTTLFDETRVWAEASAHPLSWVGGGLAASWGDEVDLQNNRLGSSLRA
CCCCCCCCEEECCCCEEEECCCEEECCCCCCCHHCCCCEECCCCCCCCCCCCCCCCCCCC
SGELELKLTDGLVFEASHAYYALDVDEGRLITANLTDVRINWQLSVESFIRFSGIYTHIR
CCEEEEEEECCEEEEECCEEEEEECCCCEEEEEEEEEEEEEEEEEHHHHHHHHHEEEEEE
RDPGLYLYHTPDNLSKDLGTELLYGYKLNPLSVFYLGYADGMRADDRWPGLTRTEQSLFM
CCCCEEEEECCCCHHHHHCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHH
KMSYAFIL
HHEEEEEC
>Mature Secondary Structure 
TRTVSMKPFRFPLAPGLALLFALSPQISFAGSASQFDIRIPSLTTEAQIDGDLSDPVWQ
CCEECCCCCCCCCCHHHHHHHHCCCCEEECCCCCEEEEECCCCCCCEECCCCCCCHHHH
QASSTYLTFETRPAENAPATVQTQAWVYATDSTLYVAFKADDPYPGNIRAHLRPRDDIWG
CCCCEEEEEECCCCCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCEEEEECCCCCCCC
DDMVGIKLDTFNNARLAYQFFINPLGVQLDSIENELNKTESAAWDGIWQSAGQITDTGYQ
CCEEEEEEECCCCCEEEEEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCEECCCEE
VEVAIPLSQLSFDDSPGDKTWGFELIRFHPRDAERRLSTHAISRQNSCQLCQLGVASGLA
EEEEEEHHHCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEHHHHCCEE
TVNLGNGLQVTPSLVAKGHRDRGQAPGSEWQDNQDVDVGADLRWALSPSSLLNATLNPDF
EEECCCCCEECHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHEECCCCCH
SQVEADAGQLDVNSSFALFFEEKRSFFLDNKEYFDSQVSLLHTRNLVDPDYGVKFTHKSE
HHHHCCCCEEECCCCEEEEEECCCHHCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCC
AHTFAFLGANDSASHFLVPGNLGSSVATIDSESHNLAGRYLYTSSEALAVGAVITGKRSD
CEEEEEEECCCCCCEEEEECCCCCCEEEECCCCCCCEEEEEEECCCCEEEEEEEECCCCC
DYHNLVVSADIKYQPTAQDTFIGQFASSDTQYPLDLYRDFCHSDEDCLPADSCNFNDCEL
CCCEEEEEECEEECCCCCCHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
NEQVLRTHKDGTFRGEMYRLGYKHATRDYYLKADYESVGDDFRADLGFIEKVDQRKAVLG
CHHHHHHCCCCCCCCEEEEECCCCCCCCEEEEECHHHHCCHHHHHHHHHHHHHHHHHEEC
GGYIWYPTDSWFNEIELGGDWDITQNQNGEKIEQELEGWLSAEGGWQSWIGGGWLTREKV
CCEEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHCCCCEEEHHHH
GRRLDASSLAIDGNTTLFDETRVWAEASAHPLSWVGGGLAASWGDEVDLQNNRLGSSLRA
CCCCCCCCEEECCCCEEEECCCEEECCCCCCCHHCCCCEECCCCCCCCCCCCCCCCCCCC
SGELELKLTDGLVFEASHAYYALDVDEGRLITANLTDVRINWQLSVESFIRFSGIYTHIR
CCEEEEEEECCEEEEECCEEEEEECCCCEEEEEEEEEEEEEEEEEHHHHHHHHHEEEEEE
RDPGLYLYHTPDNLSKDLGTELLYGYKLNPLSVFYLGYADGMRADDRWPGLTRTEQSLFM
CCCCEEEEECCCCHHHHHCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHH
KMSYAFIL
HHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA