| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is cysZ [H]
Identifier: 119774650
GI number: 119774650
Start: 1838630
End: 1839424
Strand: Reverse
Name: cysZ [H]
Synonym: Sama_1513
Alternate gene names: 119774650
Gene position: 1839424-1838630 (Counterclockwise)
Preceding gene: 119774664
Following gene: 119774649
Centisome position: 42.72
GC content: 53.71
Gene sequence:
>795_bases ATGTCACGACCGACTCTTTCATCTACCCGGGAATCAGCCCGCCAGGCCAAGAGTGGTTTTAACTACTTTATGGAAGGCTT TCATCTTATTCGCCGCCCCGGCCTGCGTACCTTCGTTTTTATTCCACTGATGATTAACCTGCTGCTGTTTGCCGGTGCCT TTTACGTGGCGTTTGGCCAGCTCGAGCAGCTTTTTGCCTACATCAGCGGTCAGCTGCCCGAATACCTGTCGTGGCTCAAT TTCCTGCTGTGGCCGCTGGCCGTATTAACCATGTTGGTGGTGATGGCCTTTATTTTCAGCTCAGTGATGAATTGGCTCGC CGCCCCCTTCAATGGCCTGCTGGCGGAAAAGGTAGAGCAGCTGCTCACCGGCAAGACATTGTATACAGGAACGACCTCGG ACTTAATCAAAGACTTGCCGCGGATCCTTGGCCGAGAATGGCTCAAGCTCAAATACTACCTGCCCCGCGCCATCCTGTTT TTACTGCTGTTTTGGGTGCCGCTTGTAGGGCAAACCGCCGCCCCTGTGCTGTGGTTTTTGTTCAGCAGCTGGATGATGGC CATTCAGTACTGTGATTATCCCTTCGATAACCACAAGGTTCCGTTTAACGACATGCGTTTCGCCCTGCGGCAAACCAAGG GGACCAGCATGAGCTTTGGTGCCGCCGTCACCCTGTTTTCGATGATCCCTGTGGTGAATTTTATCGTGATGCCAGTGGCC ATTTGCGGCGCCACCGCCATGTGGGTTGACCGTTATCGCGAAGCCTATCGCCATCCCAACATAGCGCCGGAATAA
Upstream 100 bases:
>100_bases AAGAGTGCTGGACGTATTTCGCCACAATTTCAACCTTGCAACCTTGGCAGACCTTGGCCGACAATGCCTGCAAACACAAA CGTTTGGAGCAAAGCCCCTT
Downstream 100 bases:
>100_bases TCGTCCTCGCCTTTGCAATCAGCGCCACAAAACGCCCGCTTCTATGCGGGCGTTTTATTTCCATTCAGAATTTGTAACAA ATCCACCTACATAGCGACCT
Product: putative sulfate transport protein CysZ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MSRPTLSSTRESARQAKSGFNYFMEGFHLIRRPGLRTFVFIPLMINLLLFAGAFYVAFGQLEQLFAYISGQLPEYLSWLN FLLWPLAVLTMLVVMAFIFSSVMNWLAAPFNGLLAEKVEQLLTGKTLYTGTTSDLIKDLPRILGREWLKLKYYLPRAILF LLLFWVPLVGQTAAPVLWFLFSSWMMAIQYCDYPFDNHKVPFNDMRFALRQTKGTSMSFGAAVTLFSMIPVVNFIVMPVA ICGATAMWVDRYREAYRHPNIAPE
Sequences:
>Translated_264_residues MSRPTLSSTRESARQAKSGFNYFMEGFHLIRRPGLRTFVFIPLMINLLLFAGAFYVAFGQLEQLFAYISGQLPEYLSWLN FLLWPLAVLTMLVVMAFIFSSVMNWLAAPFNGLLAEKVEQLLTGKTLYTGTTSDLIKDLPRILGREWLKLKYYLPRAILF LLLFWVPLVGQTAAPVLWFLFSSWMMAIQYCDYPFDNHKVPFNDMRFALRQTKGTSMSFGAAVTLFSMIPVVNFIVMPVA ICGATAMWVDRYREAYRHPNIAPE >Mature_263_residues SRPTLSSTRESARQAKSGFNYFMEGFHLIRRPGLRTFVFIPLMINLLLFAGAFYVAFGQLEQLFAYISGQLPEYLSWLNF LLWPLAVLTMLVVMAFIFSSVMNWLAAPFNGLLAEKVEQLLTGKTLYTGTTSDLIKDLPRILGREWLKLKYYLPRAILFL LLFWVPLVGQTAAPVLWFLFSSWMMAIQYCDYPFDNHKVPFNDMRFALRQTKGTSMSFGAAVTLFSMIPVVNFIVMPVAI CGATAMWVDRYREAYRHPNIAPE
Specific function: Possibly involved in sulfate transport [H]
COG id: COG2981
COG function: function code E; Uncharacterized protein involved in cysteine biosynthesis
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CysZ family [H]
Homologues:
Organism=Escherichia coli, GI1788753, Length=240, Percent_Identity=56.25, Blast_Score=296, Evalue=1e-81,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022985 - InterPro: IPR007496 [H]
Pfam domain/function: PF04401 DUF540 [H]
EC number: NA
Molecular weight: Translated: 30293; Mature: 30162
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRPTLSSTRESARQAKSGFNYFMEGFHLIRRPGLRTFVFIPLMINLLLFAGAFYVAFGQ CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LEQLFAYISGQLPEYLSWLNFLLWPLAVLTMLVVMAFIFSSVMNWLAAPFNGLLAEKVEQ HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH LLTGKTLYTGTTSDLIKDLPRILGREWLKLKYYLPRAILFLLLFWVPLVGQTAAPVLWFL HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH FSSWMMAIQYCDYPFDNHKVPFNDMRFALRQTKGTSMSFGAAVTLFSMIPVVNFIVMPVA HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH ICGATAMWVDRYREAYRHPNIAPE HHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SRPTLSSTRESARQAKSGFNYFMEGFHLIRRPGLRTFVFIPLMINLLLFAGAFYVAFGQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH LEQLFAYISGQLPEYLSWLNFLLWPLAVLTMLVVMAFIFSSVMNWLAAPFNGLLAEKVEQ HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH LLTGKTLYTGTTSDLIKDLPRILGREWLKLKYYLPRAILFLLLFWVPLVGQTAAPVLWFL HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH FSSWMMAIQYCDYPFDNHKVPFNDMRFALRQTKGTSMSFGAAVTLFSMIPVVNFIVMPVA HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH ICGATAMWVDRYREAYRHPNIAPE HHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA