| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774620
Identifier: 119774620
GI number: 119774620
Start: 1796061
End: 1797125
Strand: Reverse
Name: 119774620
Synonym: Sama_1483
Alternate gene names: NA
Gene position: 1797125-1796061 (Counterclockwise)
Preceding gene: 119774621
Following gene: 119774619
Centisome position: 41.73
GC content: 54.46
Gene sequence:
>1065_bases ATGTCTTTTAACCATCAGCAAAAAGTCTATCTGCCCACGGACGCCCGTACTAACCAGTACATTACGGCAGAAATCAAACT CACGGACGCCCTGCTGAACCAGTACCCCGATGTCATGAGCTGCTATCAGGCGCTGGCAAAACAGTTCTTTGAACTGGCAG AACGCCATGACTTGCGCAATGTTCATGTTATCGCCAACGATAAACTGCCTGTTGTTCGCTTTCACACCGAGGCCTACTGT CTGGAAACTGACCAGCAGGTCATTTTCTTCTACAACCCCCGCTACCACGAAGCGCAAAACCTGTTTGCCCGCGCCGATTA CCGCACCCGTAAAATCCGCTTCCTGTTCCTGGCCGTGGGTGACGAGCTGCGCGCCAATTCCGCCAGTTTCCATACTCAGG TACAGCAGCTGCTCAAAGAGCTTTCACCTCAGCTGGCACTGGAGCAGCCCATTAAAATCCGCGACCACCAGCACCTGACC TATGATTTGTTCGCCCGTGCCAAAGGCAACAAGAAAACCTACGGTTATAAGCTGCGTGGGATCCCTCAGCGCTATAAGGC CCGCAAGTGCGAACTGCCCGCAGATGTGAGCGCGCTGAGCTACGCCACTGTGACTCTGCCACTGGGCCGTCGCCTCAAAC AGCGCCTCGGTGGTGAGCATCCCAGCAACTACGGCGATATTTACGCCAAATTGCAGGACAGCTTCCAGAAGGCCGTGTTG GATCATGGTTTTAAACGCGCTGCCATGGTCGCCAATGGCCTGCTGCCCCTGGTGAGAAACAGTAAGTTTGATCGCCTGGA ATCCAACAAAGGCGTGCAAATGCTGGGCTTTGATCCCAATGCCAGCGAGCCCCAGTTTTTGGCCCACTGGCAGCCAGACA ACCTGGTAGAAACCGCCTACTTTGTGATTGCAGCCGGCAGTGAAGACCACACAGATGCAGGGTTTGGCCGCTTTATGAAT GAAGTGGAAGATGCGCTGCGCCAGTTTGCCCGGGACATAGACCTCGATGGTGAACGTCAGGATCTGGTTATCCGCTTCCA CCAACACATCAGCTACAAGCGCTGA
Upstream 100 bases:
>100_bases TGAACGAAAGTGTGTGCCGGAACAACATTTCTGCAGCAATTCCCCGGTAGGATCCGCTGCAAAGAAACCAGTCAATGGTT ATTGTACCCAAGGAGTGACT
Downstream 100 bases:
>100_bases TGACAGGTGTGACTACCACATAATCATCTGCTTAAGATTGTTAAAAAGGAGCCTCAGGGCTCCTTTTTTGTTTCTCGTCA GTTTTGTTCCCCCCTTCAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 354; Mature: 353
Protein sequence:
>354_residues MSFNHQQKVYLPTDARTNQYITAEIKLTDALLNQYPDVMSCYQALAKQFFELAERHDLRNVHVIANDKLPVVRFHTEAYC LETDQQVIFFYNPRYHEAQNLFARADYRTRKIRFLFLAVGDELRANSASFHTQVQQLLKELSPQLALEQPIKIRDHQHLT YDLFARAKGNKKTYGYKLRGIPQRYKARKCELPADVSALSYATVTLPLGRRLKQRLGGEHPSNYGDIYAKLQDSFQKAVL DHGFKRAAMVANGLLPLVRNSKFDRLESNKGVQMLGFDPNASEPQFLAHWQPDNLVETAYFVIAAGSEDHTDAGFGRFMN EVEDALRQFARDIDLDGERQDLVIRFHQHISYKR
Sequences:
>Translated_354_residues MSFNHQQKVYLPTDARTNQYITAEIKLTDALLNQYPDVMSCYQALAKQFFELAERHDLRNVHVIANDKLPVVRFHTEAYC LETDQQVIFFYNPRYHEAQNLFARADYRTRKIRFLFLAVGDELRANSASFHTQVQQLLKELSPQLALEQPIKIRDHQHLT YDLFARAKGNKKTYGYKLRGIPQRYKARKCELPADVSALSYATVTLPLGRRLKQRLGGEHPSNYGDIYAKLQDSFQKAVL DHGFKRAAMVANGLLPLVRNSKFDRLESNKGVQMLGFDPNASEPQFLAHWQPDNLVETAYFVIAAGSEDHTDAGFGRFMN EVEDALRQFARDIDLDGERQDLVIRFHQHISYKR >Mature_353_residues SFNHQQKVYLPTDARTNQYITAEIKLTDALLNQYPDVMSCYQALAKQFFELAERHDLRNVHVIANDKLPVVRFHTEAYCL ETDQQVIFFYNPRYHEAQNLFARADYRTRKIRFLFLAVGDELRANSASFHTQVQQLLKELSPQLALEQPIKIRDHQHLTY DLFARAKGNKKTYGYKLRGIPQRYKARKCELPADVSALSYATVTLPLGRRLKQRLGGEHPSNYGDIYAKLQDSFQKAVLD HGFKRAAMVANGLLPLVRNSKFDRLESNKGVQMLGFDPNASEPQFLAHWQPDNLVETAYFVIAAGSEDHTDAGFGRFMNE VEDALRQFARDIDLDGERQDLVIRFHQHISYKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40942; Mature: 40811
Theoretical pI: Translated: 9.09; Mature: 9.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFNHQQKVYLPTDARTNQYITAEIKLTDALLNQYPDVMSCYQALAKQFFELAERHDLRN CCCCCCCEEEECCCCCCCCEEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCE VHVIANDKLPVVRFHTEAYCLETDQQVIFFYNPRYHEAQNLFARADYRTRKIRFLFLAVG EEEEECCCCCEEEEECCEEEEECCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEEEEEC DELRANSASFHTQVQQLLKELSPQLALEQPIKIRDHQHLTYDLFARAKGNKKTYGYKLRG CHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCEEEHHEECCCCCCCCCEEECC IPQRYKARKCELPADVSALSYATVTLPLGRRLKQRLGGEHPSNYGDIYAKLQDSFQKAVL CCHHHHCCCCCCCCCCHHHEEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH DHGFKRAAMVANGLLPLVRNSKFDRLESNKGVQMLGFDPNASEPQFLAHWQPDNLVETAY HCCHHHHHHHHHCCHHHHCCCCCHHHHCCCCEEEEECCCCCCCCCEEEECCCCCHHEEEE FVIAAGSEDHTDAGFGRFMNEVEDALRQFARDIDLDGERQDLVIRFHQHISYKR EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC >Mature Secondary Structure SFNHQQKVYLPTDARTNQYITAEIKLTDALLNQYPDVMSCYQALAKQFFELAERHDLRN CCCCCCEEEECCCCCCCCEEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCE VHVIANDKLPVVRFHTEAYCLETDQQVIFFYNPRYHEAQNLFARADYRTRKIRFLFLAVG EEEEECCCCCEEEEECCEEEEECCCEEEEEECCCHHHHHHHHHHCCCCCEEEEEEEEEEC DELRANSASFHTQVQQLLKELSPQLALEQPIKIRDHQHLTYDLFARAKGNKKTYGYKLRG CHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCEEEHHEECCCCCCCCCEEECC IPQRYKARKCELPADVSALSYATVTLPLGRRLKQRLGGEHPSNYGDIYAKLQDSFQKAVL CCHHHHCCCCCCCCCCHHHEEEEEEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH DHGFKRAAMVANGLLPLVRNSKFDRLESNKGVQMLGFDPNASEPQFLAHWQPDNLVETAY HCCHHHHHHHHHCCHHHHCCCCCHHHHCCCCEEEEECCCCCCCCCEEEECCCCCHHEEEE FVIAAGSEDHTDAGFGRFMNEVEDALRQFARDIDLDGERQDLVIRFHQHISYKR EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA