| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774422
Identifier: 119774422
GI number: 119774422
Start: 1573654
End: 1574322
Strand: Reverse
Name: 119774422
Synonym: Sama_1285
Alternate gene names: NA
Gene position: 1574322-1573654 (Counterclockwise)
Preceding gene: 119774423
Following gene: 119774421
Centisome position: 36.56
GC content: 50.37
Gene sequence:
>669_bases ATGATTTTGCTGGTTGGTGGTGAAAAAGGCGGTAGTGGCAAGAGTTGCCTGGCGCAGAATATTGCAGTGCATATCACCCA AAAATTCAATGCCAACGTGCTCATGGTGGACTGTGACCCCCAGCGAACAACCTCTGATTGGATCCAGGCCCGAAACAACG ATCCCAGCCTGCCGCAAATCAATTGCATCCAGTTATACGGTAAAATCCGTAACGATCTCTTGAGCCTGAATGAACGTTTC GACTATGTGATTGTGGACTGTGGTGGTCAGGATAACCTCGCCATGCGTGCCGCCATGTCGGTGGCAACTTACGTTGTTGT GCCACTGAGGCCAAAACGGCGTGACCTCAAAACACTGCCGCACATGGAAGACATGCTCAGTACCTGTAAGATGGTTAACC CCAAGATGGTCGCAACTGTCGTGCTGACTCAGTGCCCTGCTTTGCCCACTCAGGCCAAACGCATCATTGAAGCAAAGGAA GTTGTTACATCCTTTGGTTTGAGAGTGCTGGACTCTGTCACCTTCAGCCGCAACATCTATGATGACAGTGAGGAAAAAGG ATCCTCGGTCATCGAAATCGAGCCCGACGGCAAAGCCGCCGAAGAAATTCGTGCCATTGCCGATGAACTCTTGGCCATAC CACCAGAAAATTCCTATGAGCTTAACTGA
Upstream 100 bases:
>100_bases TCATATTGCTATGCAATTGATTTAAGCGATGCTTTTCTATCGTTTCCGACACACTGTTCTATACTGATGTGAAAAGATTG GCTTTTACGGAGCGTCCATT
Downstream 100 bases:
>100_bases CTTAAAGCGTAAAAAGCCCAAACAGGACCGCGGTAAAATATCGGTGGAAGATTTCATCGATGATGCCAACAATTATGCTC ACGGACGGCCTACTTTGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: Cobyrinic Acid A C-Diamide Synthase; Partition Protein; ParA Family Protein; Plasmid Partitioning Protein; ParA-Like Protein; Plasmid Partition Protein ParA; Partitioning Protein; ATPase Involved In Chromosome Partitioning-Like Protein; Plasmid Partition Protein ParA-Like Protein; Plasmid Partition Protein; PARA Protein; Plasmid Stability Protein ParA; Plasmid Stability/Partitioning Protein; ATPases Involved In Chromosome Partitioning; Chromosome Partitioning; ATPase; ParA Protein; Chromosome Partitioning Protein; CobQ/CobB/MinD/ParA Domain-Containing Protein; MinD/ParA Family ATPase; Plasmid Partitioning-Family Protein; Partition Protein A; ParA Partitioning-Like Protein; Chromosome Partitioning Protein ParA; Partition Protein ATPase Activity; ParA Partitioning Protein; Plasmid Segregation Oscillating ATPase ParF; Partitioning Protein ParA-Family; ATPase ParA Type; Partitioning Protein ParA Family; ParA Plasmid Partitioning Protein; Plasmid Stability Protein; ATPase Putative Partition Protein; Chromosome Partitioning ATPase ParA
Number of amino acids: Translated: 222; Mature: 222
Protein sequence:
>222_residues MILLVGGEKGGSGKSCLAQNIAVHITQKFNANVLMVDCDPQRTTSDWIQARNNDPSLPQINCIQLYGKIRNDLLSLNERF DYVIVDCGGQDNLAMRAAMSVATYVVVPLRPKRRDLKTLPHMEDMLSTCKMVNPKMVATVVLTQCPALPTQAKRIIEAKE VVTSFGLRVLDSVTFSRNIYDDSEEKGSSVIEIEPDGKAAEEIRAIADELLAIPPENSYELN
Sequences:
>Translated_222_residues MILLVGGEKGGSGKSCLAQNIAVHITQKFNANVLMVDCDPQRTTSDWIQARNNDPSLPQINCIQLYGKIRNDLLSLNERF DYVIVDCGGQDNLAMRAAMSVATYVVVPLRPKRRDLKTLPHMEDMLSTCKMVNPKMVATVVLTQCPALPTQAKRIIEAKE VVTSFGLRVLDSVTFSRNIYDDSEEKGSSVIEIEPDGKAAEEIRAIADELLAIPPENSYELN >Mature_222_residues MILLVGGEKGGSGKSCLAQNIAVHITQKFNANVLMVDCDPQRTTSDWIQARNNDPSLPQINCIQLYGKIRNDLLSLNERF DYVIVDCGGQDNLAMRAAMSVATYVVVPLRPKRRDLKTLPHMEDMLSTCKMVNPKMVATVVLTQCPALPTQAKRIIEAKE VVTSFGLRVLDSVTFSRNIYDDSEEKGSSVIEIEPDGKAAEEIRAIADELLAIPPENSYELN
Specific function: Unknown
COG id: COG1192
COG function: function code D; ATPases involved in chromosome partitioning
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24538; Mature: 24538
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 6.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILLVGGEKGGSGKSCLAQNIAVHITQKFNANVLMVDCDPQRTTSDWIQARNNDPSLPQI CEEEEECCCCCCCHHHHHCCEEEEEEEECCCCEEEEECCCCCCCHHHHHCCCCCCCCCCH NCIQLYGKIRNDLLSLNERFDYVIVDCGGQDNLAMRAAMSVATYVVVPLRPKRRDLKTLP HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHEEEEEECCCCCCHHHCCC HMEDMLSTCKMVNPKMVATVVLTQCPALPTQAKRIIEAKEVVTSFGLRVLDSVTFSRNIY CHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DDSEEKGSSVIEIEPDGKAAEEIRAIADELLAIPPENSYELN CCCHHCCCEEEEECCCCCHHHHHHHHHHHHEECCCCCCCCCC >Mature Secondary Structure MILLVGGEKGGSGKSCLAQNIAVHITQKFNANVLMVDCDPQRTTSDWIQARNNDPSLPQI CEEEEECCCCCCCHHHHHCCEEEEEEEECCCCEEEEECCCCCCCHHHHHCCCCCCCCCCH NCIQLYGKIRNDLLSLNERFDYVIVDCGGQDNLAMRAAMSVATYVVVPLRPKRRDLKTLP HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHEEEEEECCCCCCHHHCCC HMEDMLSTCKMVNPKMVATVVLTQCPALPTQAKRIIEAKEVVTSFGLRVLDSVTFSRNIY CHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DDSEEKGSSVIEIEPDGKAAEEIRAIADELLAIPPENSYELN CCCHHCCCEEEEECCCCCHHHHHHHHHHHHEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA