| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774398
Identifier: 119774398
GI number: 119774398
Start: 1548284
End: 1550113
Strand: Direct
Name: 119774398
Synonym: Sama_1261
Alternate gene names: NA
Gene position: 1548284-1550113 (Clockwise)
Preceding gene: 119774396
Following gene: 119774399
Centisome position: 35.96
GC content: 52.08
Gene sequence:
>1830_bases ATGCAAAAAACGTTGTTGGCAATGGTAGTGGCTTCGGTATTCGCGCTGTCGGGATGTTCACAGGAAAATACGGCCGCAGT CTCAGGCACAAACGTTGATGCACAGGGCCGCGCTGCAGTCGCCTCGGAGGAAACAGCGCAGAGTCGCTATTTAGCCATGG TAGACAGCTACTTTAAGGATTTCCTTAAACTCGAACCGATTTATGCCACTTTTTTTGGAGTAAATGATTATAACGCCGAG TTTGGTGGCGATCTGTCCGACGAATACCTCAAAGCCCGCCACGACTATAATACCCGCTATCTGGCACAGGCGAGGAAGAT AGATAAGTCAGCGTTACCCGCGGATTTGCAGCTCTCCTATGACTTATTTGTTTACGATCGCAACATGGCCTTGGTCGATG AGACTTTTCCGGCTCGTTTCCTGCCCATGAATCAGTTTTACAGTACAGTTATCACCATGATCCAGCTCGGCAGCGGTGAG GCTGCGCAGCCATTTGTGACCAAACAGGATTACCTGAACTGGGAGTCAAGGGTAGATGGCTTTATTGCCTGGCTTGAAAG GGCCCAGGCGCGCATGAATGAAGGTATGGCCAGCAAGGTAGTTCTGCCAAGAATATTGGTAGAACGCATGATCCCGCAGT TCACAGCCCAGCAGGTCACAGATGTCAAAGACAGTATTTTTTATGCCCCGGTAAAGTCCCTGCCGGAGACGTTCAGCGAG CAGGATAGAGCGGAAATCGAAGCGCGTTATCAGGCAATGATTGCCCAGCGTCTGCTGCCTGCATTGGCGAAAATGGAAGA CTTCCTGAAAGACACTTATCTGCCTGCGGCCCGCGCGACAGACGGTTGGTCAGGGCTGCCTAACGGTAAGGCCTGGTATC AGCATCTGGCCAATCTGCATACCACTACCGGCAAGTCGGTTGATGAAATTCATGAGACTGGTCTTAACGAAGTCGCCCGT ATTTTGTCCGAAATGGACAAGGTTCGGCAGCAGGTCGGCTTCGAAGGCGGCCTTAAAGCCTTTTTTGCTTCGCTTTCCAG CGAGCCTCAGTACTTCTTCACTGAGCGGCAGGAACTGATTGACGGCTATATGGCGCTTAAAGACACAATCAATCAGGTGC TGCCTCAGTATTTTAACGTGATGCCCAAGGCAGATTACGTCGTCAAACCCGTTGAGTCTTTCCGTGAGCAGTCGGCCGCG GGAGCCTCTTATGAATCTCCAGCGGTGGATGGCAGTCGTCCTGGGGTATTCTACATCAACACCTATAACCTTAAGGCTCA GCCAAAGTGGGGAATGACCACACTGTCACTTCACGAGGCGGCGCCGGGCCACCATTTCCAGATTGCCATTAAGCAAGAGC TGACTGGCGTACCCGAGTTCCAGCGCTTCAGTGGCTATACCGCATTTGAAGAAGGTTGGGCGCTGTATGCCGAGTATTTG GGCATCGAGATGGGGCTTTTCAGCGACCCTTATCAATACTTTGGTAAGCTCTCGGATGAGATGCTGCGTGCGATGCGCCT GGTGGTGGATACAGGTTTACATGCCAAGGGCTGGAGCCGCGAGCAGGCCATTCAGTATATGAAAGACAATTCGCCGATGG CCGAATCTGACATCATCGCCGAAGTAGAACGTTATATGGCCATCCCCGGTCAGGCGCTGTCCTATAAGGTCGGTCAGCTT AAGATCCTGGAACTGAGGGCTGATGCTGAAAAGCGCTTGGGAGATAAGTTCAGTCTGCCTGCTTTCCACGACCAGATCCT GACGTCGGGATCGTTGCCAATGGCTGTGATGGAGCAAAAGGTCGACCGTTGGGTTAAAAGCCAGCTGTAA
Upstream 100 bases:
>100_bases AATTTCTAAATGAATAAATCATAAGGCGAACTCCTGCGTTAACTTAATTATCAGTATAGAAAACATCGCAGGTTACATCG TCATAGGGAGATGAAAGACT
Downstream 100 bases:
>100_bases GGAAAATCTTAAGCCCGGCTGTTAATTCGTACGCAAGTCCCTATACTGGAATTCCTGCCGAGGTTAGCAGGCCATAGGTT GTAAAAACGCCGGGCTTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 609; Mature: 609
Protein sequence:
>609_residues MQKTLLAMVVASVFALSGCSQENTAAVSGTNVDAQGRAAVASEETAQSRYLAMVDSYFKDFLKLEPIYATFFGVNDYNAE FGGDLSDEYLKARHDYNTRYLAQARKIDKSALPADLQLSYDLFVYDRNMALVDETFPARFLPMNQFYSTVITMIQLGSGE AAQPFVTKQDYLNWESRVDGFIAWLERAQARMNEGMASKVVLPRILVERMIPQFTAQQVTDVKDSIFYAPVKSLPETFSE QDRAEIEARYQAMIAQRLLPALAKMEDFLKDTYLPAARATDGWSGLPNGKAWYQHLANLHTTTGKSVDEIHETGLNEVAR ILSEMDKVRQQVGFEGGLKAFFASLSSEPQYFFTERQELIDGYMALKDTINQVLPQYFNVMPKADYVVKPVESFREQSAA GASYESPAVDGSRPGVFYINTYNLKAQPKWGMTTLSLHEAAPGHHFQIAIKQELTGVPEFQRFSGYTAFEEGWALYAEYL GIEMGLFSDPYQYFGKLSDEMLRAMRLVVDTGLHAKGWSREQAIQYMKDNSPMAESDIIAEVERYMAIPGQALSYKVGQL KILELRADAEKRLGDKFSLPAFHDQILTSGSLPMAVMEQKVDRWVKSQL
Sequences:
>Translated_609_residues MQKTLLAMVVASVFALSGCSQENTAAVSGTNVDAQGRAAVASEETAQSRYLAMVDSYFKDFLKLEPIYATFFGVNDYNAE FGGDLSDEYLKARHDYNTRYLAQARKIDKSALPADLQLSYDLFVYDRNMALVDETFPARFLPMNQFYSTVITMIQLGSGE AAQPFVTKQDYLNWESRVDGFIAWLERAQARMNEGMASKVVLPRILVERMIPQFTAQQVTDVKDSIFYAPVKSLPETFSE QDRAEIEARYQAMIAQRLLPALAKMEDFLKDTYLPAARATDGWSGLPNGKAWYQHLANLHTTTGKSVDEIHETGLNEVAR ILSEMDKVRQQVGFEGGLKAFFASLSSEPQYFFTERQELIDGYMALKDTINQVLPQYFNVMPKADYVVKPVESFREQSAA GASYESPAVDGSRPGVFYINTYNLKAQPKWGMTTLSLHEAAPGHHFQIAIKQELTGVPEFQRFSGYTAFEEGWALYAEYL GIEMGLFSDPYQYFGKLSDEMLRAMRLVVDTGLHAKGWSREQAIQYMKDNSPMAESDIIAEVERYMAIPGQALSYKVGQL KILELRADAEKRLGDKFSLPAFHDQILTSGSLPMAVMEQKVDRWVKSQL >Mature_609_residues MQKTLLAMVVASVFALSGCSQENTAAVSGTNVDAQGRAAVASEETAQSRYLAMVDSYFKDFLKLEPIYATFFGVNDYNAE FGGDLSDEYLKARHDYNTRYLAQARKIDKSALPADLQLSYDLFVYDRNMALVDETFPARFLPMNQFYSTVITMIQLGSGE AAQPFVTKQDYLNWESRVDGFIAWLERAQARMNEGMASKVVLPRILVERMIPQFTAQQVTDVKDSIFYAPVKSLPETFSE QDRAEIEARYQAMIAQRLLPALAKMEDFLKDTYLPAARATDGWSGLPNGKAWYQHLANLHTTTGKSVDEIHETGLNEVAR ILSEMDKVRQQVGFEGGLKAFFASLSSEPQYFFTERQELIDGYMALKDTINQVLPQYFNVMPKADYVVKPVESFREQSAA GASYESPAVDGSRPGVFYINTYNLKAQPKWGMTTLSLHEAAPGHHFQIAIKQELTGVPEFQRFSGYTAFEEGWALYAEYL GIEMGLFSDPYQYFGKLSDEMLRAMRLVVDTGLHAKGWSREQAIQYMKDNSPMAESDIIAEVERYMAIPGQALSYKVGQL KILELRADAEKRLGDKFSLPAFHDQILTSGSLPMAVMEQKVDRWVKSQL
Specific function: Unknown
COG id: COG4805
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68636; Mature: 68636
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQKTLLAMVVASVFALSGCSQENTAAVSGTNVDAQGRAAVASEETAQSRYLAMVDSYFKD CCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH FLKLEPIYATFFGVNDYNAEFGGDLSDEYLKARHDYNTRYLAQARKIDKSALPADLQLSY HHHCCCHHHEEECCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEE DLFVYDRNMALVDETFPARFLPMNQFYSTVITMIQLGSGEAAQPFVTKQDYLNWESRVDG EEEEEECCEEEEECCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHH FIAWLERAQARMNEGMASKVVLPRILVERMIPQFTAQQVTDVKDSIFYAPVKSLPETFSE HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QDRAEIEARYQAMIAQRLLPALAKMEDFLKDTYLPAARATDGWSGLPNGKAWYQHLANLH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH TTTGKSVDEIHETGLNEVARILSEMDKVRQQVGFEGGLKAFFASLSSEPQYFFTERQELI CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHH DGYMALKDTINQVLPQYFNVMPKADYVVKPVESFREQSAAGASYESPAVDGSRPGVFYIN HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE TYNLKAQPKWGMTTLSLHEAAPGHHFQIAIKQELTGVPEFQRFSGYTAFEEGWALYAEYL EEEEEECCCCCCEEEEHHCCCCCCEEEEEEHHHCCCCCCHHHHCCCCHHHHHHHHHHHHH GIEMGLFSDPYQYFGKLSDEMLRAMRLVVDTGLHAKGWSREQAIQYMKDNSPMAESDIIA HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH EVERYMAIPGQALSYKVGQLKILELRADAEKRLGDKFSLPAFHDQILTSGSLPMAVMEQK HHHHHHCCCCHHHEEECCCEEEEEECCCHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHH VDRWVKSQL HHHHHHHCC >Mature Secondary Structure MQKTLLAMVVASVFALSGCSQENTAAVSGTNVDAQGRAAVASEETAQSRYLAMVDSYFKD CCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH FLKLEPIYATFFGVNDYNAEFGGDLSDEYLKARHDYNTRYLAQARKIDKSALPADLQLSY HHHCCCHHHEEECCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEE DLFVYDRNMALVDETFPARFLPMNQFYSTVITMIQLGSGEAAQPFVTKQDYLNWESRVDG EEEEEECCEEEEECCCCCHHCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHHHH FIAWLERAQARMNEGMASKVVLPRILVERMIPQFTAQQVTDVKDSIFYAPVKSLPETFSE HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QDRAEIEARYQAMIAQRLLPALAKMEDFLKDTYLPAARATDGWSGLPNGKAWYQHLANLH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH TTTGKSVDEIHETGLNEVARILSEMDKVRQQVGFEGGLKAFFASLSSEPQYFFTERQELI CCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHH DGYMALKDTINQVLPQYFNVMPKADYVVKPVESFREQSAAGASYESPAVDGSRPGVFYIN HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEE TYNLKAQPKWGMTTLSLHEAAPGHHFQIAIKQELTGVPEFQRFSGYTAFEEGWALYAEYL EEEEEECCCCCCEEEEHHCCCCCCEEEEEEHHHCCCCCCHHHHCCCCHHHHHHHHHHHHH GIEMGLFSDPYQYFGKLSDEMLRAMRLVVDTGLHAKGWSREQAIQYMKDNSPMAESDIIA HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH EVERYMAIPGQALSYKVGQLKILELRADAEKRLGDKFSLPAFHDQILTSGSLPMAVMEQK HHHHHHCCCCHHHEEECCCEEEEEECCCHHHHCCCCCCCCHHHHHHHCCCCCCHHHHHHH VDRWVKSQL HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA