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The map label for this gene is 119774396

Identifier: 119774396

GI number: 119774396

Start: 1546403

End: 1547653

Strand: Direct

Name: 119774396

Synonym: Sama_1259

Alternate gene names: NA

Gene position: 1546403-1547653 (Clockwise)

Preceding gene: 119774395

Following gene: 119774398

Centisome position: 35.91

GC content: 51.56

Gene sequence:

>1251_bases
ATGCGTCAAGTTAAACTTGCCAGCGCTTTGCTGCTGTCCTTGACTGCCGGTGCCCTGGTCATGCCAGTGGCACAGGCCGC
CGAAAAATGTCCGATGGAAAAGCGTCAGTCACGTGCGGTTGGCGAGACGGTAGGTAAGAAGGTCCAAAAGTCCTTTGAAG
CTTACACCAATGGCCAAGTCGACGAGGCGATCGCCATTTTGCTTGAAGCCAATGCCAAAGGCGACTTCGACAAGGCGTAT
GTTGCCCGCATGCTGGGTAACTTCTATGCCGAGAAAGGCAAAATGGATACAGCCATCAAGTACATGAAACAGGCCGTTGA
GGCTGATGTACTGGGCGGTACTGACCATGCGGCTTCCATGAAGTTGTACGCCGATCTGCTCATCCAGGAGAAGAAGTGGA
AAGAGGCAATCGCCGTTTACTATAAGTGGATGGACTTTGCCTGTAAGACTGATGATCCTGTGGTTTATCGTCGTATCGGT
ATTGCCTACAGCGAACTCAAGCAGTGGGATAAGGTATTGGAAGTGGCAGACCAAGGTCTGTCGCACGCCAAGGAGCCGGA
CAAAAACCTGTACCAGATGAAGCTGACTGCTTACTTCGAGAAGAAGCAGTACAAGAACGCTGTCAAGGTACTGGAAACCA
TGGTTCCCCTGTTCCAGGACGACAAGCGTTTGTGGATCCAGCTGGCACAGTTCTACCTGCTGACCGAAGACTTCCCCCGC
TCATTGCAGACTTATGACCTGAGTTACCGCAATGGCTTCCTGAAGGAAGATGCAGGCAGTTTGGTCCGCTACTCTCAGCT
GTTGGCGAGCCAGGGCTCTCCTTATCGTGCCGCCACCATCATGGAGAAATTCATGAAGGCAGGTGTGATTGAGTCCAACG
CCAAGCACTACGAGCAGCTCGCAGGCTTTTTCCAGAACTCCAAAGAGATCGAAAAAGCAGCTGAATACTACGGTAAAGCG
GCAGAAGAAAAGAAAGACGGTAAGCTGTTCCTCAAGCAGGGACGCATGTTGGCACTGGCTGAGAAATATTCTGCAGCCGT
TCCAGCTCTGGAGAAATCTCTGGATGCCGGCATTCCCAACCCAGGCGAAGCGCACTTTGAGCTGGCGTTGATTCATCTGC
AACTGAAACAGTATAAGTCTGCTTACTCACGGGCTAAGCTGGCCGCTCAGGACAAGAAAACTGAGCGCAGTGCCAAGAGC
TACATCTCTTATATTCAAGAGAAAGCACGCATCAACAACGTGACGCTCTAA

Upstream 100 bases:

>100_bases
AGTGGAAGTACAAGCCTAAAGTTGTTGATGGCCAAGCCCAGAAGCAGCCCGGCATGACTGTACAACTGGACTTTAAACTG
GATAAAGGAGGCAAATAAGG

Downstream 100 bases:

>100_bases
CACTTATAAGCAATCGAAAAAGCCACCTTAGGGTGGCTTTTTTTATTGCAGGTTTCCCACGACACTGTGTTTGTCTCTTT
CCTGCGTCAAGGTTTGGGCC

Product: TPR domain-containing protein

Products: NA

Alternate protein names: TPR Domain-Containing Protein; Tetratricopeptide Domain-Containing Protein; TPR Domain Protein; Tetratricopeptide Repeat Domain Protein; PAS/PAC Sensor Protein; TPR Domain Protein Component Of nB System; TPR Repeat Protein; Tetratricopeptide Region; Tetratricopeptide Repeat-Containing Protein; Short Chain Dehydrogenase

Number of amino acids: Translated: 416; Mature: 416

Protein sequence:

>416_residues
MRQVKLASALLLSLTAGALVMPVAQAAEKCPMEKRQSRAVGETVGKKVQKSFEAYTNGQVDEAIAILLEANAKGDFDKAY
VARMLGNFYAEKGKMDTAIKYMKQAVEADVLGGTDHAASMKLYADLLIQEKKWKEAIAVYYKWMDFACKTDDPVVYRRIG
IAYSELKQWDKVLEVADQGLSHAKEPDKNLYQMKLTAYFEKKQYKNAVKVLETMVPLFQDDKRLWIQLAQFYLLTEDFPR
SLQTYDLSYRNGFLKEDAGSLVRYSQLLASQGSPYRAATIMEKFMKAGVIESNAKHYEQLAGFFQNSKEIEKAAEYYGKA
AEEKKDGKLFLKQGRMLALAEKYSAAVPALEKSLDAGIPNPGEAHFELALIHLQLKQYKSAYSRAKLAAQDKKTERSAKS
YISYIQEKARINNVTL

Sequences:

>Translated_416_residues
MRQVKLASALLLSLTAGALVMPVAQAAEKCPMEKRQSRAVGETVGKKVQKSFEAYTNGQVDEAIAILLEANAKGDFDKAY
VARMLGNFYAEKGKMDTAIKYMKQAVEADVLGGTDHAASMKLYADLLIQEKKWKEAIAVYYKWMDFACKTDDPVVYRRIG
IAYSELKQWDKVLEVADQGLSHAKEPDKNLYQMKLTAYFEKKQYKNAVKVLETMVPLFQDDKRLWIQLAQFYLLTEDFPR
SLQTYDLSYRNGFLKEDAGSLVRYSQLLASQGSPYRAATIMEKFMKAGVIESNAKHYEQLAGFFQNSKEIEKAAEYYGKA
AEEKKDGKLFLKQGRMLALAEKYSAAVPALEKSLDAGIPNPGEAHFELALIHLQLKQYKSAYSRAKLAAQDKKTERSAKS
YISYIQEKARINNVTL
>Mature_416_residues
MRQVKLASALLLSLTAGALVMPVAQAAEKCPMEKRQSRAVGETVGKKVQKSFEAYTNGQVDEAIAILLEANAKGDFDKAY
VARMLGNFYAEKGKMDTAIKYMKQAVEADVLGGTDHAASMKLYADLLIQEKKWKEAIAVYYKWMDFACKTDDPVVYRRIG
IAYSELKQWDKVLEVADQGLSHAKEPDKNLYQMKLTAYFEKKQYKNAVKVLETMVPLFQDDKRLWIQLAQFYLLTEDFPR
SLQTYDLSYRNGFLKEDAGSLVRYSQLLASQGSPYRAATIMEKFMKAGVIESNAKHYEQLAGFFQNSKEIEKAAEYYGKA
AEEKKDGKLFLKQGRMLALAEKYSAAVPALEKSLDAGIPNPGEAHFELALIHLQLKQYKSAYSRAKLAAQDKKTERSAKS
YISYIQEKARINNVTL

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46983; Mature: 46983

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MRQVKLASALLLSLTAGALVMPVAQAAEKCPMEKRQSRAVGETVGKKVQKSFEAYTNGQV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
DEAIAILLEANAKGDFDKAYVARMLGNFYAEKGKMDTAIKYMKQAVEADVLGGTDHAASM
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
KLYADLLIQEKKWKEAIAVYYKWMDFACKTDDPVVYRRIGIAYSELKQWDKVLEVADQGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SHAKEPDKNLYQMKLTAYFEKKQYKNAVKVLETMVPLFQDDKRLWIQLAQFYLLTEDFPR
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
SLQTYDLSYRNGFLKEDAGSLVRYSQLLASQGSPYRAATIMEKFMKAGVIESNAKHYEQL
HHHHHCCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHH
AGFFQNSKEIEKAAEYYGKAAEEKKDGKLFLKQGRMLALAEKYSAAVPALEKSLDAGIPN
HHHHHCHHHHHHHHHHHCCHHCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PGEAHFELALIHLQLKQYKSAYSRAKLAAQDKKTERSAKSYISYIQEKARINNVTL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA