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The map label for this gene is ybaV [C]

Identifier: 119774380

GI number: 119774380

Start: 1527548

End: 1527859

Strand: Direct

Name: ybaV [C]

Synonym: Sama_1243

Alternate gene names: 119774380

Gene position: 1527548-1527859 (Clockwise)

Preceding gene: 119774379

Following gene: 119774387

Centisome position: 35.47

GC content: 53.53

Gene sequence:

>312_bases
ATGAACAAGCTACTTGTTACCCTTTTGCTTGGCGCCGCCTTCACGCATTTTCCGCTGCTGGCCGCCGAAGCCCCCAAAAC
AGACACAGCCCCTAACGCTGAGGTGCAGATGCCTCAGACCAGTAAAATCAACATCAACACCGCGACCGAAAGCGAACTGC
AGTTGCTCAAAGGCATTGGGCAGGCAAAAGCCAAGGCGATAGTTGAGTACCGTAACCAATATGGCCGCTTTGCCAGTGTG
GAAGACCTCACCAAGGTGGCTGGCGTTGGTCAGAAGGTGCTGGACGACAACAGGGATATCTTGAGTCTCTAA

Upstream 100 bases:

>100_bases
CTAACCGGAGATTTGCGCTTTTACAAAGGGTAACTAGAGTTATTGGAGTGGCAAGGAAAGGGAGCCCCGGCCACGTTAAA
CATCTCAATGGAGTGAACCT

Downstream 100 bases:

>100_bases
CTGACAAAAGGCCTGCATTGCAGGCCTTTTGTTTATCTATTGTGCTGTTGTGCAGGGTAAAAGCGCTAATTTCCGGTTTT
AACTTGATTTGCCGCTTGGC

Product: DNA uptake protein-related DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MNKLLVTLLLGAAFTHFPLLAAEAPKTDTAPNAEVQMPQTSKININTATESELQLLKGIGQAKAKAIVEYRNQYGRFASV
EDLTKVAGVGQKVLDDNRDILSL

Sequences:

>Translated_103_residues
MNKLLVTLLLGAAFTHFPLLAAEAPKTDTAPNAEVQMPQTSKININTATESELQLLKGIGQAKAKAIVEYRNQYGRFASV
EDLTKVAGVGQKVLDDNRDILSL
>Mature_103_residues
MNKLLVTLLLGAAFTHFPLLAAEAPKTDTAPNAEVQMPQTSKININTATESELQLLKGIGQAKAKAIVEYRNQYGRFASV
EDLTKVAGVGQKVLDDNRDILSL

Specific function: Unknown

COG id: COG1555

COG function: function code L; DNA uptake protein and related DNA-binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HhH domains [H]

Homologues:

Organism=Escherichia coli, GI1786646, Length=116, Percent_Identity=36.2068965517241, Blast_Score=63, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004509
- InterPro:   IPR003583 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11139; Mature: 11139

Theoretical pI: Translated: 7.53; Mature: 7.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLLVTLLLGAAFTHFPLLAAEAPKTDTAPNAEVQMPQTSKININTATESELQLLKGIG
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEECCCCHHHHHHHHHCC
QAKAKAIVEYRNQYGRFASVEDLTKVAGVGQKVLDDNRDILSL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHCCCCCCCCC
>Mature Secondary Structure
MNKLLVTLLLGAAFTHFPLLAAEAPKTDTAPNAEVQMPQTSKININTATESELQLLKGIG
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEECCCCHHHHHHHHHCC
QAKAKAIVEYRNQYGRFASVEDLTKVAGVGQKVLDDNRDILSL
HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]