Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774316

Identifier: 119774316

GI number: 119774316

Start: 1440275

End: 1440505

Strand: Reverse

Name: 119774316

Synonym: Sama_1179

Alternate gene names: NA

Gene position: 1440505-1440275 (Counterclockwise)

Preceding gene: 119774323

Following gene: 119774311

Centisome position: 33.45

GC content: 54.55

Gene sequence:

>231_bases
ATGATCCAATCCCCCTGCGTTGCCCGCTGTGGTCTCAATGATGAGGACTACTGTATGGGTTGCCTGCGACATATCGATGA
AATCGTGGGTTGGTCTCAGGCAAGTGATGAGCGCAAACTGGAGATCCTGGCCAGTCTGCCCACCCGCAGAAAAGCCCTCG
AAGGTGAAAATAATCAGCCACTGAGCAGGGCCAAGTGGCTGGAATCAGAAGCCCGCTTGGGGCTCGATTAA

Upstream 100 bases:

>100_bases
AAATTGAAAGTCGGCCAGAGTGATATTCAATACATCTTTATCGTAAGCAGCAGCCGATGCTACACTCTGCCCGCCGATGT
TGTATGCCCGGAGCCAACCT

Downstream 100 bases:

>100_bases
TCCGGCTAACCCGCTTTATTGTGCCTTGAGCGCGGCCTCTGCCAGCCCCCTTGTGTGTTCAAGCAGGCGCTTATCCCCCA
GCGCGCCATGGCCCGGCACC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MIQSPCVARCGLNDEDYCMGCLRHIDEIVGWSQASDERKLEILASLPTRRKALEGENNQPLSRAKWLESEARLGLD

Sequences:

>Translated_76_residues
MIQSPCVARCGLNDEDYCMGCLRHIDEIVGWSQASDERKLEILASLPTRRKALEGENNQPLSRAKWLESEARLGLD
>Mature_76_residues
MIQSPCVARCGLNDEDYCMGCLRHIDEIVGWSQASDERKLEILASLPTRRKALEGENNQPLSRAKWLESEARLGLD

Specific function: Unknown

COG id: COG3313

COG function: function code R; Predicted Fe-S protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8588; Mature: 8588

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQSPCVARCGLNDEDYCMGCLRHIDEIVGWSQASDERKLEILASLPTRRKALEGENNQP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHCCCCCCC
LSRAKWLESEARLGLD
CHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIQSPCVARCGLNDEDYCMGCLRHIDEIVGWSQASDERKLEILASLPTRRKALEGENNQP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHCCCCCCC
LSRAKWLESEARLGLD
CHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA