| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774316
Identifier: 119774316
GI number: 119774316
Start: 1440275
End: 1440505
Strand: Reverse
Name: 119774316
Synonym: Sama_1179
Alternate gene names: NA
Gene position: 1440505-1440275 (Counterclockwise)
Preceding gene: 119774323
Following gene: 119774311
Centisome position: 33.45
GC content: 54.55
Gene sequence:
>231_bases ATGATCCAATCCCCCTGCGTTGCCCGCTGTGGTCTCAATGATGAGGACTACTGTATGGGTTGCCTGCGACATATCGATGA AATCGTGGGTTGGTCTCAGGCAAGTGATGAGCGCAAACTGGAGATCCTGGCCAGTCTGCCCACCCGCAGAAAAGCCCTCG AAGGTGAAAATAATCAGCCACTGAGCAGGGCCAAGTGGCTGGAATCAGAAGCCCGCTTGGGGCTCGATTAA
Upstream 100 bases:
>100_bases AAATTGAAAGTCGGCCAGAGTGATATTCAATACATCTTTATCGTAAGCAGCAGCCGATGCTACACTCTGCCCGCCGATGT TGTATGCCCGGAGCCAACCT
Downstream 100 bases:
>100_bases TCCGGCTAACCCGCTTTATTGTGCCTTGAGCGCGGCCTCTGCCAGCCCCCTTGTGTGTTCAAGCAGGCGCTTATCCCCCA GCGCGCCATGGCCCGGCACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 76; Mature: 76
Protein sequence:
>76_residues MIQSPCVARCGLNDEDYCMGCLRHIDEIVGWSQASDERKLEILASLPTRRKALEGENNQPLSRAKWLESEARLGLD
Sequences:
>Translated_76_residues MIQSPCVARCGLNDEDYCMGCLRHIDEIVGWSQASDERKLEILASLPTRRKALEGENNQPLSRAKWLESEARLGLD >Mature_76_residues MIQSPCVARCGLNDEDYCMGCLRHIDEIVGWSQASDERKLEILASLPTRRKALEGENNQPLSRAKWLESEARLGLD
Specific function: Unknown
COG id: COG3313
COG function: function code R; Predicted Fe-S protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8588; Mature: 8588
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 7.9 %Cys+Met (Translated Protein) 5.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 7.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIQSPCVARCGLNDEDYCMGCLRHIDEIVGWSQASDERKLEILASLPTRRKALEGENNQP CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHCCCCCCC LSRAKWLESEARLGLD CHHHHHHHHHHCCCCC >Mature Secondary Structure MIQSPCVARCGLNDEDYCMGCLRHIDEIVGWSQASDERKLEILASLPTRRKALEGENNQP CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHCCCCCCC LSRAKWLESEARLGLD CHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA