| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774216
Identifier: 119774216
GI number: 119774216
Start: 1307198
End: 1307464
Strand: Direct
Name: 119774216
Synonym: Sama_1079
Alternate gene names: NA
Gene position: 1307198-1307464 (Clockwise)
Preceding gene: 119774215
Following gene: 119774218
Centisome position: 30.36
GC content: 44.57
Gene sequence:
>267_bases TTGCCAGAGATGTTCAAGTCAGTCACAAGTGCCTGTTCAATGCGCCAGCAACAAGCCTATGCTGAAAGGGAGAATGATGA TGAACTTTACCCATGCAGCTGTCGATTGATGTCGACTGCAAAAATTCGGTTCACTTATTCAGACCGGGCCTTTTTCAAGA AGTTCATCGTCAGCGTAAAAAATTCAAAAAAAATTTTTCCCGGTGCAAAAGTCAATTATCCCGGTGGCCATCCCGGTGGC GATTATGACCTGTCACTGCACATTTGA
Upstream 100 bases:
>100_bases GCGGTGTAACGTCATTCATGTGTCGCAGCGCCGCTGCTTAGAGCAAGCGTGCAGTGAGTCGGGTGTGTGGGTTTCAGGAT AAAAAAAAGGCAACCAATGG
Downstream 100 bases:
>100_bases GGAATAAAAAAAGGCAACCTGGGGAGGTTGCCATGGGATCCTTCAGTGGACCAAGGGGACTGCGCTAGTAAGTCCCAGGG AGAATGATGAACACGAAAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 88; Mature: 87
Protein sequence:
>88_residues MPEMFKSVTSACSMRQQQAYAERENDDELYPCSCRLMSTAKIRFTYSDRAFFKKFIVSVKNSKKIFPGAKVNYPGGHPGG DYDLSLHI
Sequences:
>Translated_88_residues MPEMFKSVTSACSMRQQQAYAERENDDELYPCSCRLMSTAKIRFTYSDRAFFKKFIVSVKNSKKIFPGAKVNYPGGHPGG DYDLSLHI >Mature_87_residues PEMFKSVTSACSMRQQQAYAERENDDELYPCSCRLMSTAKIRFTYSDRAFFKKFIVSVKNSKKIFPGAKVNYPGGHPGGD YDLSLHI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10037; Mature: 9905
Theoretical pI: Translated: 9.18; Mature: 9.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 8.0 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 6.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEMFKSVTSACSMRQQQAYAERENDDELYPCSCRLMSTAKIRFTYSDRAFFKKFIVSVK CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEECCHHHHHHHHHHHC NSKKIFPGAKVNYPGGHPGGDYDLSLHI CCCEECCCCEECCCCCCCCCCEEEEEEC >Mature Secondary Structure PEMFKSVTSACSMRQQQAYAERENDDELYPCSCRLMSTAKIRFTYSDRAFFKKFIVSVK CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEEEECCHHHHHHHHHHHC NSKKIFPGAKVNYPGGHPGGDYDLSLHI CCCEECCCCEECCCCCCCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA