Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774138

Identifier: 119774138

GI number: 119774138

Start: 1213024

End: 1214100

Strand: Direct

Name: 119774138

Synonym: Sama_1001

Alternate gene names: NA

Gene position: 1213024-1214100 (Clockwise)

Preceding gene: 119774137

Following gene: 119774140

Centisome position: 28.17

GC content: 53.2

Gene sequence:

>1077_bases
ATGTCTCCTGAACGCACCGAGGGACTTCGCCTTTGGTATTTCAAAGGCTTTTCCAGCAGGGCTAACCCAATCCTGAGAAT
CGCCGTAGCTGCGCTGGTACCGCTGTTTGTACTCCATTATCTGGAAAACCCGTTGCCCATGTTGGTGTCGGTATTTGCGG
TGATCATGCTCACCCTGATGCCGGGACGCCCCTCACTGCAGGTTCTGTCGAAACTCAGCATGGTAGTGGTGGCTGCCGCC
ATGGTGCAGCATGCTGCCGGTATTCTGCTGTCGGGAACGGGCACCGGCTCCTGGATGTTTTTATTTGCGGTGCTCTTCTA
CAGCCTGTCGCGAATCCACCTGAACCCCAAAGATATCGTCGGGACTATGATGATGATTCTTGGGATCATGGTGACTATAT
TGCACTGGCAATTTGCCACGACAGTATCTGACTTACCGCTGGTACTGGCGGCCAACTTCGTGGGCGCCATTGTGATGGTG
TATCTGGTATTTTGGCTGTTTCCAGGGGAAGAGCTGGGCGCCGAGGCTGACACGGCCTGGGAAGTAACCCCCAGTCACTG
GCTTAAAATTGTTGTTAAGTCACTATTTTTATTACTGGTAATATTTTTGCTGATTGATTCGGATAACAGTCAGAGCCTGC
TTATCGCTATTACGCTTGCCAATCTCATCAAAGATCCCAATCCCATGGCCGGAACCCACAATGGACGGCAAAGGCTGTGG
ACGACCGCGGTGGGAGTGCTGCTGACATTACCCTTATTGTTGGCATTTTGGCTGGATATGCACTGGTGGCTGTTGATGTT
GTTTGCCATTGCCCTGGCCTTGTGGGGCAGTGCAACGGCGCTGGAACACAGGGTATCCATGGCAGAGTATCAACTGCTGA
TGAGCAGCTTTGTCATGCTGGTTTATCAGGTCATCAGCCATGATGGCACCAGCTCTCTCACCTCGTCCCTCACCCGATTT
GGGGCCGTGGTACTGGCTGTTTTACTGGGGGTGATGATGCTGGGAATGCTGTCTGAACTTGGGGTGACTCGCACCGGTAG
CCGTGTGGCCAAGCCCAGTAACGTGGGCCAAGACTGA

Upstream 100 bases:

>100_bases
CGTTTTGGCTCTCAGGTGACAGTGGCGTTTTACACCGGTGAAAGCAGTGTGGGAGAGACCCTTGCCCAACTGTGGCTGTG
GTGCTGGAGTAAGCTGACTT

Downstream 100 bases:

>100_bases
CTTGGTGTTTACCGGTGAAGCCTTAATGTTAGCAGGTGAGACCTCAGAGCTTGCCGGTGAGGCGGGCGTATTTTATCAGC
AGCTCATCCTGACTCTCAGG

Product: major facilitator superfamily permease

Products: NA

Alternate protein names: Permease; Permease Facilitator Superfamily; DMT Family Permease; Permease Of Drug/Metabolite Transporter

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MSPERTEGLRLWYFKGFSSRANPILRIAVAALVPLFVLHYLENPLPMLVSVFAVIMLTLMPGRPSLQVLSKLSMVVVAAA
MVQHAAGILLSGTGTGSWMFLFAVLFYSLSRIHLNPKDIVGTMMMILGIMVTILHWQFATTVSDLPLVLAANFVGAIVMV
YLVFWLFPGEELGAEADTAWEVTPSHWLKIVVKSLFLLLVIFLLIDSDNSQSLLIAITLANLIKDPNPMAGTHNGRQRLW
TTAVGVLLTLPLLLAFWLDMHWWLLMLFAIALALWGSATALEHRVSMAEYQLLMSSFVMLVYQVISHDGTSSLTSSLTRF
GAVVLAVLLGVMMLGMLSELGVTRTGSRVAKPSNVGQD

Sequences:

>Translated_358_residues
MSPERTEGLRLWYFKGFSSRANPILRIAVAALVPLFVLHYLENPLPMLVSVFAVIMLTLMPGRPSLQVLSKLSMVVVAAA
MVQHAAGILLSGTGTGSWMFLFAVLFYSLSRIHLNPKDIVGTMMMILGIMVTILHWQFATTVSDLPLVLAANFVGAIVMV
YLVFWLFPGEELGAEADTAWEVTPSHWLKIVVKSLFLLLVIFLLIDSDNSQSLLIAITLANLIKDPNPMAGTHNGRQRLW
TTAVGVLLTLPLLLAFWLDMHWWLLMLFAIALALWGSATALEHRVSMAEYQLLMSSFVMLVYQVISHDGTSSLTSSLTRF
GAVVLAVLLGVMMLGMLSELGVTRTGSRVAKPSNVGQD
>Mature_357_residues
SPERTEGLRLWYFKGFSSRANPILRIAVAALVPLFVLHYLENPLPMLVSVFAVIMLTLMPGRPSLQVLSKLSMVVVAAAM
VQHAAGILLSGTGTGSWMFLFAVLFYSLSRIHLNPKDIVGTMMMILGIMVTILHWQFATTVSDLPLVLAANFVGAIVMVY
LVFWLFPGEELGAEADTAWEVTPSHWLKIVVKSLFLLLVIFLLIDSDNSQSLLIAITLANLIKDPNPMAGTHNGRQRLWT
TAVGVLLTLPLLLAFWLDMHWWLLMLFAIALALWGSATALEHRVSMAEYQLLMSSFVMLVYQVISHDGTSSLTSSLTRFG
AVVLAVLLGVMMLGMLSELGVTRTGSRVAKPSNVGQD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 39327; Mature: 39196

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPERTEGLRLWYFKGFSSRANPILRIAVAALVPLFVLHYLENPLPMLVSVFAVIMLTLM
CCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
PGRPSLQVLSKLSMVVVAAAMVQHAAGILLSGTGTGSWMFLFAVLFYSLSRIHLNPKDIV
CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHH
GTMMMILGIMVTILHWQFATTVSDLPLVLAANFVGAIVMVYLVFWLFPGEELGAEADTAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCC
EVTPSHWLKIVVKSLFLLLVIFLLIDSDNSQSLLIAITLANLIKDPNPMAGTHNGRQRLW
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH
TTAVGVLLTLPLLLAFWLDMHWWLLMLFAIALALWGSATALEHRVSMAEYQLLMSSFVML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
VYQVISHDGTSSLTSSLTRFGAVVLAVLLGVMMLGMLSELGVTRTGSRVAKPSNVGQD
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SPERTEGLRLWYFKGFSSRANPILRIAVAALVPLFVLHYLENPLPMLVSVFAVIMLTLM
CCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
PGRPSLQVLSKLSMVVVAAAMVQHAAGILLSGTGTGSWMFLFAVLFYSLSRIHLNPKDIV
CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHHHHHCCCHHHHH
GTMMMILGIMVTILHWQFATTVSDLPLVLAANFVGAIVMVYLVFWLFPGEELGAEADTAW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCC
EVTPSHWLKIVVKSLFLLLVIFLLIDSDNSQSLLIAITLANLIKDPNPMAGTHNGRQRLW
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH
TTAVGVLLTLPLLLAFWLDMHWWLLMLFAIALALWGSATALEHRVSMAEYQLLMSSFVML
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
VYQVISHDGTSSLTSSLTRFGAVVLAVLLGVMMLGMLSELGVTRTGSRVAKPSNVGQD
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA