| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119774116
Identifier: 119774116
GI number: 119774116
Start: 1183073
End: 1184050
Strand: Direct
Name: 119774116
Synonym: Sama_0979
Alternate gene names: NA
Gene position: 1183073-1184050 (Clockwise)
Preceding gene: 119774115
Following gene: 119774118
Centisome position: 27.47
GC content: 54.6
Gene sequence:
>978_bases ATGACAGCGATTTTGACTCAAGCTTCATCCAACTCTCTGCAAAAAGACACGATTTTCCAGCAATCGTTGTTTTTACCTTA CGACGGCGGTCAGTTGCACCTGAGGCATATCAGTCCCGCTTCCCCTGCTGCTGCGCGCTCCCCCTTGCTGATGCTTCATG GTGCCATGTCCAACGGCCGGGTGTTTTACAGTGAGTCCGGGCGGGGGCTGGCGAGCTTTTTGGCCCGGCAGGGGTTTGAG GTGTATGTCCTCGATACGGCGGGACGGGGCCTCAGTACTCCCAAGCTGTCCAAAGGCGTTGATCCGGGGCAGGGCAAGGT GATCCGTGAACAGTTACCCCTGGTACAGGCATTCATTCTTGAGCGCCATCCGTTAACGCAGGGGGTACACTGGTGTGGCC ACTCCTGGGGTGGGGTTCTCATGGCAAGCAGTTTGGTGAGATACCCGGATATGGCCGCCAGGGTACGATCTTTACTGACT TTTGGCAGCAAAAGAACCATACGAACCCGCTCATTGAAAAAATGGTGGATGGTGGACATGTTCTGGAACCGGCTTGCACC TGCCATCGCCACACAGCGCGGTTATTTACCCGCCGATAGCCTGAAACTCGGTATGGATAACGAGAGTATCAGTTCCCTGT GCGAGAGTATCGACTGGGTCCGTGGTGATTGGATAGATCATGATGACGGCTTTGATTACGCAGCAGCCGCAAGGGTTAAA GGTATACCGCCAGCCTGGTTTATTGCCGGCGCCCGGGATACTGTGCTGGGTAACCCCAGTGATGTGAAAGACATGATGGC AGAATGCTGCGCTGCTGATGCCCGCTTTACCTTGCTGTCCAGGGCGCATGGATATCGCCACGACTATGACCATGCGGGCA TGCTGACACATCTTGATGCCCCATCAGATCATTTTATGGAGGTAGCAGACTGGTTGCTTGGTTTTGATATGACGGCGCTC AAAGACCCGGTTAACTGA
Upstream 100 bases:
>100_bases CAAGCGTGAACTCCGAGGGTTTGAGTAATTGCTCTTGAGTTTTGTCTGTGCTCTGGTTTAGCCTGATTGAATATAGGCCC AGGCACAGACCTTGATAACC
Downstream 100 bases:
>100_bases GGGCGCAATTTACTGACTGAGTGCGCTGAAACGCAGCACAACTTCGTCTGTGACATCCAATAATTCACCTACACCGACAA TGCGCCACAATTGCTCTTCA
Product: alpha/beta hydrolase fold domain-containing protein
Products: NA
Alternate protein names: Esterase/Lipase; Esterase/Lipase/Thioesterase Family Protein; Alpha/Beta Fold Family Hydrolase; Lipase; Esterase; Alpha/Beta Hydrolase Fold Protein
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MTAILTQASSNSLQKDTIFQQSLFLPYDGGQLHLRHISPASPAAARSPLLMLHGAMSNGRVFYSESGRGLASFLARQGFE VYVLDTAGRGLSTPKLSKGVDPGQGKVIREQLPLVQAFILERHPLTQGVHWCGHSWGGVLMASSLVRYPDMAARVRSLLT FGSKRTIRTRSLKKWWMVDMFWNRLAPAIATQRGYLPADSLKLGMDNESISSLCESIDWVRGDWIDHDDGFDYAAAARVK GIPPAWFIAGARDTVLGNPSDVKDMMAECCAADARFTLLSRAHGYRHDYDHAGMLTHLDAPSDHFMEVADWLLGFDMTAL KDPVN
Sequences:
>Translated_325_residues MTAILTQASSNSLQKDTIFQQSLFLPYDGGQLHLRHISPASPAAARSPLLMLHGAMSNGRVFYSESGRGLASFLARQGFE VYVLDTAGRGLSTPKLSKGVDPGQGKVIREQLPLVQAFILERHPLTQGVHWCGHSWGGVLMASSLVRYPDMAARVRSLLT FGSKRTIRTRSLKKWWMVDMFWNRLAPAIATQRGYLPADSLKLGMDNESISSLCESIDWVRGDWIDHDDGFDYAAAARVK GIPPAWFIAGARDTVLGNPSDVKDMMAECCAADARFTLLSRAHGYRHDYDHAGMLTHLDAPSDHFMEVADWLLGFDMTAL KDPVN >Mature_324_residues TAILTQASSNSLQKDTIFQQSLFLPYDGGQLHLRHISPASPAAARSPLLMLHGAMSNGRVFYSESGRGLASFLARQGFEV YVLDTAGRGLSTPKLSKGVDPGQGKVIREQLPLVQAFILERHPLTQGVHWCGHSWGGVLMASSLVRYPDMAARVRSLLTF GSKRTIRTRSLKKWWMVDMFWNRLAPAIATQRGYLPADSLKLGMDNESISSLCESIDWVRGDWIDHDDGFDYAAAARVKG IPPAWFIAGARDTVLGNPSDVKDMMAECCAADARFTLLSRAHGYRHDYDHAGMLTHLDAPSDHFMEVADWLLGFDMTALK DPVN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35921; Mature: 35790
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAILTQASSNSLQKDTIFQQSLFLPYDGGQLHLRHISPASPAAARSPLLMLHGAMSNGR CCEEEECCCCCCCHHHHHHHHHEECCCCCCEEEEEECCCCCCCHHCCCEEEEEECCCCCE VFYSESGRGLASFLARQGFEVYVLDTAGRGLSTPKLSKGVDPGQGKVIREQLPLVQAFIL EEECCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHH ERHPLTQGVHWCGHSWGGVLMASSLVRYPDMAARVRSLLTFGSKRTIRTRSLKKWWMVDM HCCCHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH FWNRLAPAIATQRGYLPADSLKLGMDNESISSLCESIDWVRGDWIDHDDGFDYAAAARVK HHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCC GIPPAWFIAGARDTVLGNPSDVKDMMAECCAADARFTLLSRAHGYRHDYDHAGMLTHLDA CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEECCC PSDHFMEVADWLLGFDMTALKDPVN CCHHHHHHHHHHHCCCHHHHCCCCC >Mature Secondary Structure TAILTQASSNSLQKDTIFQQSLFLPYDGGQLHLRHISPASPAAARSPLLMLHGAMSNGR CEEEECCCCCCCHHHHHHHHHEECCCCCCEEEEEECCCCCCCHHCCCEEEEEECCCCCE VFYSESGRGLASFLARQGFEVYVLDTAGRGLSTPKLSKGVDPGQGKVIREQLPLVQAFIL EEECCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHH ERHPLTQGVHWCGHSWGGVLMASSLVRYPDMAARVRSLLTFGSKRTIRTRSLKKWWMVDM HCCCHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH FWNRLAPAIATQRGYLPADSLKLGMDNESISSLCESIDWVRGDWIDHDDGFDYAAAARVK HHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCC GIPPAWFIAGARDTVLGNPSDVKDMMAECCAADARFTLLSRAHGYRHDYDHAGMLTHLDA CCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCEEEECCC PSDHFMEVADWLLGFDMTALKDPVN CCHHHHHHHHHHHCCCHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA