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The map label for this gene is deoB

Identifier: 119774112

GI number: 119774112

Start: 1179009

End: 1180232

Strand: Direct

Name: deoB

Synonym: Sama_0975

Alternate gene names: 119774112

Gene position: 1179009-1180232 (Clockwise)

Preceding gene: 119774111

Following gene: 119774113

Centisome position: 27.38

GC content: 54.74

Gene sequence:

>1224_bases
ATGAAACGTACCATTATTTTGATGCTGGACTCCTTCGGCATCGGTGCTGCCGATGATGCAGACAAGTTCGGCGACGTGGG
GTCAGACACCTTTGGTCACATTGCACAAATGTGCGCTGAGGGTAAGGCCAACAACGGCCGTGAAGGCGAACTCAAGCTGC
CAAACTTAAGCCGTCTGGGCCTGGCCCATGCTGCCAAAGAAGCGACAGGTGCATTTGCCCCTGGATTTGGCGACAACGTT
GATATCATTGGCGCTTACGGTCACTGTCAGGAGCTGAGCTCAGGTAAAGACACGCCCAGTGGTCACTGGGAAATGGCCGG
TGTGCCCGTGCTGTTTGAGTGGGGCTATTTCAGCGAGCATCAGAATTCTTTCCCGAAAGAACTGACCGACAAAATTCTTG
AGCGCGCTGGCTTGACCGAGTTTTTGGGTAATTGCCACGCCTCTGGTACCACCATTCTGGAAGAGCTCGGCGAAGAGCAT
ATGAAAACCGGAAAGCCGATTTTCTACACCTCCGCCGACAGCGTGTTTCAGATTGCCTGCCATGAAGAAAGCTTCGGGCT
TGAGAACCTCTACCGCCTGTGTGAAATCGCCCGGGAAGAGCTGGAGCCATACAACATCGGCCGTGTTATTGCCCGTCCCT
TTGTCGGCACAGGTCCAAGTGACTTTGCCCGTACCGGCAACCGTCGCGATTATGCGGTTGAGCCACCATCAAAAACCGTG
CTGGATAAGCTCAAACAAGCCGGTGGTGAAGTGGTGAGTGTGGGTAAGATTTCTGACATCTACGCCCACTGCGGTATCAC
CAAAAAGGTGAAGGCATCAGGACTTGAAGATTTGTTCGATGCCACACTGGAGCAAATCAAGCAGGCCGGTGACAACACCA
TAGTGTTCACCAACTTTGTGGATTTTGACTCCCACTACGGTCATCGCCGCGACGTGTCTGGTTATGCCAAGGCACTGGAA
TACTTCGACGCCCGTCTGCCTGAGCTGATGGCGCTGCTGGAAGAAGGCGATTTGCTGCTGCTCACTGCCGATCACGGCTG
CGACCCAACCTGGCAGGGCACCGACCATACCCGTGAATTCGTGCCTGTATTGGCTTATGGTGCCGGCCTTGAGGCAGGCT
CACTGGGCAAGCGCGGCAGCTTTGCGGATATTGGTCAGTCGATTGCCAGCTACTTCGGGTTGGCGGCAATGGAATATGGC
GAGTCATTCATGCCGGCCCGCTAA

Upstream 100 bases:

>100_bases
GGGCCGTTCGTGGGGCTATCACTGTCAGCGACAAGCAACCCGAAAAAACACCTGAGATCTATCAGTACGTACGTGCTGAA
GATCTGTAAGGGGAAGAGTT

Downstream 100 bases:

>100_bases
GGTCTGCTGAAAAAGTTTCGTTTTGGCGACTTCCTTTGAGTCGCCTATTATCAAAGACTTAAGTCTTAATCAAAAATACA
GGGGTTATACAGATGGCTAC

Product: phosphopentomutase

Products: NA

Alternate protein names: Phosphodeoxyribomutase

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MKRTIILMLDSFGIGAADDADKFGDVGSDTFGHIAQMCAEGKANNGREGELKLPNLSRLGLAHAAKEATGAFAPGFGDNV
DIIGAYGHCQELSSGKDTPSGHWEMAGVPVLFEWGYFSEHQNSFPKELTDKILERAGLTEFLGNCHASGTTILEELGEEH
MKTGKPIFYTSADSVFQIACHEESFGLENLYRLCEIAREELEPYNIGRVIARPFVGTGPSDFARTGNRRDYAVEPPSKTV
LDKLKQAGGEVVSVGKISDIYAHCGITKKVKASGLEDLFDATLEQIKQAGDNTIVFTNFVDFDSHYGHRRDVSGYAKALE
YFDARLPELMALLEEGDLLLLTADHGCDPTWQGTDHTREFVPVLAYGAGLEAGSLGKRGSFADIGQSIASYFGLAAMEYG
ESFMPAR

Sequences:

>Translated_407_residues
MKRTIILMLDSFGIGAADDADKFGDVGSDTFGHIAQMCAEGKANNGREGELKLPNLSRLGLAHAAKEATGAFAPGFGDNV
DIIGAYGHCQELSSGKDTPSGHWEMAGVPVLFEWGYFSEHQNSFPKELTDKILERAGLTEFLGNCHASGTTILEELGEEH
MKTGKPIFYTSADSVFQIACHEESFGLENLYRLCEIAREELEPYNIGRVIARPFVGTGPSDFARTGNRRDYAVEPPSKTV
LDKLKQAGGEVVSVGKISDIYAHCGITKKVKASGLEDLFDATLEQIKQAGDNTIVFTNFVDFDSHYGHRRDVSGYAKALE
YFDARLPELMALLEEGDLLLLTADHGCDPTWQGTDHTREFVPVLAYGAGLEAGSLGKRGSFADIGQSIASYFGLAAMEYG
ESFMPAR
>Mature_407_residues
MKRTIILMLDSFGIGAADDADKFGDVGSDTFGHIAQMCAEGKANNGREGELKLPNLSRLGLAHAAKEATGAFAPGFGDNV
DIIGAYGHCQELSSGKDTPSGHWEMAGVPVLFEWGYFSEHQNSFPKELTDKILERAGLTEFLGNCHASGTTILEELGEEH
MKTGKPIFYTSADSVFQIACHEESFGLENLYRLCEIAREELEPYNIGRVIARPFVGTGPSDFARTGNRRDYAVEPPSKTV
LDKLKQAGGEVVSVGKISDIYAHCGITKKVKASGLEDLFDATLEQIKQAGDNTIVFTNFVDFDSHYGHRRDVSGYAKALE
YFDARLPELMALLEEGDLLLLTADHGCDPTWQGTDHTREFVPVLAYGAGLEAGSLGKRGSFADIGQSIASYFGLAAMEYG
ESFMPAR

Specific function: Phosphotransfer between the C1 and C5 carbon atoms of pentose

COG id: COG1015

COG function: function code G; Phosphopentomutase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphopentomutase family

Homologues:

Organism=Escherichia coli, GI1790843, Length=407, Percent_Identity=69.2874692874693, Blast_Score=595, Evalue=1e-171,
Organism=Escherichia coli, GI1789781, Length=435, Percent_Identity=26.4367816091954, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DEOB_SHEAM (A1S476)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_926852.1
- ProteinModelPortal:   A1S476
- SMR:   A1S476
- STRING:   A1S476
- GeneID:   4603227
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_0975
- NMPDR:   fig|326297.7.peg.915
- eggNOG:   COG1015
- HOGENOM:   HBG644230
- OMA:   CHASGTE
- PhylomeDB:   A1S476
- ProtClustDB:   PRK05362
- GO:   GO:0005737
- HAMAP:   MF_00740
- InterPro:   IPR017849
- InterPro:   IPR017850
- InterPro:   IPR010045
- InterPro:   IPR006124
- Gene3D:   G3DSA:3.40.720.10
- PIRSF:   PIRSF001491
- TIGRFAMs:   TIGR01696

Pfam domain/function: PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core

EC number: =5.4.2.7

Molecular weight: Translated: 44191; Mature: 44191

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRTIILMLDSFGIGAADDADKFGDVGSDTFGHIAQMCAEGKANNGREGELKLPNLSRLG
CCCEEEEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCHHHHH
LAHAAKEATGAFAPGFGDNVDIIGAYGHCQELSSGKDTPSGHWEMAGVPVLFEWGYFSEH
HHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCEEECCCCEEEECCCCCHH
QNSFPKELTDKILERAGLTEFLGNCHASGTTILEELGEEHMKTGKPIFYTSADSVFQIAC
HCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEE
HEESFGLENLYRLCEIAREELEPYNIGRVIARPFVGTGPSDFARTGNRRDYAVEPPSKTV
CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHCCCCCCEEECCCHHHH
LDKLKQAGGEVVSVGKISDIYAHCGITKKVKASGLEDLFDATLEQIKQAGDNTIVFTNFV
HHHHHHCCCCEEEECCHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEE
DFDSHYGHRRDVSGYAKALEYFDARLPELMALLEEGDLLLLTADHGCDPTWQGTDHTREF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHH
VPVLAYGAGLEAGSLGKRGSFADIGQSIASYFGLAAMEYGESFMPAR
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKRTIILMLDSFGIGAADDADKFGDVGSDTFGHIAQMCAEGKANNGREGELKLPNLSRLG
CCCEEEEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCHHHHH
LAHAAKEATGAFAPGFGDNVDIIGAYGHCQELSSGKDTPSGHWEMAGVPVLFEWGYFSEH
HHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCCCCEEECCCCEEEECCCCCHH
QNSFPKELTDKILERAGLTEFLGNCHASGTTILEELGEEHMKTGKPIFYTSADSVFQIAC
HCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEE
HEESFGLENLYRLCEIAREELEPYNIGRVIARPFVGTGPSDFARTGNRRDYAVEPPSKTV
CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHCCCCCCEEECCCHHHH
LDKLKQAGGEVVSVGKISDIYAHCGITKKVKASGLEDLFDATLEQIKQAGDNTIVFTNFV
HHHHHHCCCCEEEECCHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEEEE
DFDSHYGHRRDVSGYAKALEYFDARLPELMALLEEGDLLLLTADHGCDPTWQGTDHTREF
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHH
VPVLAYGAGLEAGSLGKRGSFADIGQSIASYFGLAAMEYGESFMPAR
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA