| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is yeiJ [C]
Identifier: 119774108
GI number: 119774108
Start: 1174043
End: 1175302
Strand: Direct
Name: yeiJ [C]
Synonym: Sama_0971
Alternate gene names: 119774108
Gene position: 1174043-1175302 (Clockwise)
Preceding gene: 119774107
Following gene: 119774109
Centisome position: 27.26
GC content: 52.14
Gene sequence:
>1260_bases ATGAGTATATTAATGAGCTTGGTAGGCGTTGCAGTCCTACTTGGAATAGGTTTCCTCCTTTCCAATAACAAAAAGGCGAT CAGTGTACGTGCCGTTGGTGGTGCGCTGGCTATTCAGGCTGCCTTCGGTGGCTTCGTTCTGTATGTACCTTGGGGTAAAG ACATCCTGAAGACTGTGTCTGACGGTGTATCTGCCGTTATCGGTTACGGTCAGAACGGTATCAACTTCCTGTTCGGTGAT CTGGCTCAGTTCAAAGTTGGCTTCATTTTCGCCATCAACGTGCTGCCAGTTATCATTTTCTTCTCTTCTTTGATTGCTGT GCTTTACTACCTGGGCATCATGCAGTGGGTCATCCGTATCATCGGTGGTGGTCTGCAAAAAGCTCTCGGTACAAGCCGTA CAGAGTCCATGTCTGCTACTGCGAACATCTTCGTAGGTCAGACAGAAGCGCCTCTGGTAGTACGTCCATTCATCCCAACC ATGACTCAGTCTGAACTGTTCGCCATCATGGTGGGCGGTCTGGCTTCTATCGCGGGTTCTGTACTGGCCGGTTACGCCTC TATGGGCGTTAAGATTGAGTACCTGGTAGCTGCATCATTCATGGCTGCTCCTGGTGGTCTGTTGATGGCCAAGCTGATGC ACCCTGAAACTGAAAATACCAAGAACGAAATGGATGAGCTGCCAGAAGATCCTGACAAGCCAGCCAACGTTCTGGACGCT GCCGCAGCTGGTGCCTCTTCCGGTATGCACCTGGCTCTGAACGTAGGCGCGATGCTGATTGCCTTCGTGGGTCTGATTGC CATGATCAACGGTATCATCGGTGGCGTAGGTGGCTGGTTCGGTGTTGAAGGTCTGACCCTCGAGCTGATCCTTGGTTACA TCTTCATGCCACTGGCATTCCTTATCGGTGTTCCATGGAACGAAGCGTTGGTTGCCGGTTCTTTCATCGGTCAGAAGATC GTTGTGAACGAGTTCGTTGCTTACCTGAACTTCGCTCCTTACCTGAAAGACATCGCTGACGGCGGTATCGTGGTAGCTGA GACTGGTGCTGCTATGTCTGACCGTACCAAGGCTATCGTGTCCTTCGCTCTGTGTGGATTCGCTAACCTGTCTTCTATCG CTATTCTGCTGGGTGGTCTGGGAGCGATGGCGCCTAACCGTCGCCACGATCTGGCCAAGCTGGGTATCCGTGCCGTTATC GCCGGTTCTCTGGCTAACCTGATGAGTGCGACTCTGGCAGGTCTGTTCCTGGCGATTTAA
Upstream 100 bases:
>100_bases TCAAAACGACGATTTTCAGCAAGGGCTAAGGTATAATCTTGCTCGGAAATAGGTTGGTTAACAACATAACTAAAAAGTGT TAACAAAAGGGTGATGGTTA
Downstream 100 bases:
>100_bases TCGCGCAGAGGGGCCCTGATATCGGGGCCCCTGTTAATACAACCATTTTCCAACGAATCGTCTGAAACTTATCCATCACT GTGATACAGAGCGATGGGGC
Product: nucleoside transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 419; Mature: 418
Protein sequence:
>419_residues MSILMSLVGVAVLLGIGFLLSNNKKAISVRAVGGALAIQAAFGGFVLYVPWGKDILKTVSDGVSAVIGYGQNGINFLFGD LAQFKVGFIFAINVLPVIIFFSSLIAVLYYLGIMQWVIRIIGGGLQKALGTSRTESMSATANIFVGQTEAPLVVRPFIPT MTQSELFAIMVGGLASIAGSVLAGYASMGVKIEYLVAASFMAAPGGLLMAKLMHPETENTKNEMDELPEDPDKPANVLDA AAAGASSGMHLALNVGAMLIAFVGLIAMINGIIGGVGGWFGVEGLTLELILGYIFMPLAFLIGVPWNEALVAGSFIGQKI VVNEFVAYLNFAPYLKDIADGGIVVAETGAAMSDRTKAIVSFALCGFANLSSIAILLGGLGAMAPNRRHDLAKLGIRAVI AGSLANLMSATLAGLFLAI
Sequences:
>Translated_419_residues MSILMSLVGVAVLLGIGFLLSNNKKAISVRAVGGALAIQAAFGGFVLYVPWGKDILKTVSDGVSAVIGYGQNGINFLFGD LAQFKVGFIFAINVLPVIIFFSSLIAVLYYLGIMQWVIRIIGGGLQKALGTSRTESMSATANIFVGQTEAPLVVRPFIPT MTQSELFAIMVGGLASIAGSVLAGYASMGVKIEYLVAASFMAAPGGLLMAKLMHPETENTKNEMDELPEDPDKPANVLDA AAAGASSGMHLALNVGAMLIAFVGLIAMINGIIGGVGGWFGVEGLTLELILGYIFMPLAFLIGVPWNEALVAGSFIGQKI VVNEFVAYLNFAPYLKDIADGGIVVAETGAAMSDRTKAIVSFALCGFANLSSIAILLGGLGAMAPNRRHDLAKLGIRAVI AGSLANLMSATLAGLFLAI >Mature_418_residues SILMSLVGVAVLLGIGFLLSNNKKAISVRAVGGALAIQAAFGGFVLYVPWGKDILKTVSDGVSAVIGYGQNGINFLFGDL AQFKVGFIFAINVLPVIIFFSSLIAVLYYLGIMQWVIRIIGGGLQKALGTSRTESMSATANIFVGQTEAPLVVRPFIPTM TQSELFAIMVGGLASIAGSVLAGYASMGVKIEYLVAASFMAAPGGLLMAKLMHPETENTKNEMDELPEDPDKPANVLDAA AAGASSGMHLALNVGAMLIAFVGLIAMINGIIGGVGGWFGVEGLTLELILGYIFMPLAFLIGVPWNEALVAGSFIGQKIV VNEFVAYLNFAPYLKDIADGGIVVAETGAAMSDRTKAIVSFALCGFANLSSIAILLGGLGAMAPNRRHDLAKLGIRAVIA GSLANLMSATLAGLFLAI
Specific function: Unknown
COG id: COG1972
COG function: function code F; Nucleoside permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family [H]
Homologues:
Organism=Homo sapiens, GI42542381, Length=414, Percent_Identity=38.6473429951691, Blast_Score=298, Evalue=6e-81, Organism=Homo sapiens, GI227116277, Length=414, Percent_Identity=39.1304347826087, Blast_Score=297, Evalue=1e-80, Organism=Homo sapiens, GI11545853, Length=355, Percent_Identity=43.0985915492958, Blast_Score=293, Evalue=3e-79, Organism=Escherichia coli, GI1788485, Length=424, Percent_Identity=48.5849056603774, Blast_Score=370, Evalue=1e-103, Organism=Escherichia coli, GI1788488, Length=424, Percent_Identity=49.0566037735849, Blast_Score=356, Evalue=2e-99, Organism=Escherichia coli, GI1788737, Length=415, Percent_Identity=28.6746987951807, Blast_Score=174, Evalue=8e-45, Organism=Caenorhabditis elegans, GI17560276, Length=409, Percent_Identity=30.0733496332518, Blast_Score=213, Evalue=2e-55, Organism=Caenorhabditis elegans, GI71991794, Length=412, Percent_Identity=30.5825242718447, Blast_Score=207, Evalue=1e-53, Organism=Caenorhabditis elegans, GI25146537, Length=199, Percent_Identity=32.6633165829146, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI45552519, Length=414, Percent_Identity=37.9227053140097, Blast_Score=286, Evalue=2e-77, Organism=Drosophila melanogaster, GI45552517, Length=414, Percent_Identity=37.9227053140097, Blast_Score=286, Evalue=2e-77, Organism=Drosophila melanogaster, GI19921868, Length=414, Percent_Identity=37.9227053140097, Blast_Score=286, Evalue=2e-77, Organism=Drosophila melanogaster, GI281360430, Length=411, Percent_Identity=37.4695863746959, Blast_Score=270, Evalue=1e-72,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008276 - InterPro: IPR018270 - InterPro: IPR011642 - InterPro: IPR011657 - InterPro: IPR002668 [H]
Pfam domain/function: PF07670 Gate; PF07662 Nucleos_tra2_C; PF01773 Nucleos_tra2_N [H]
EC number: NA
Molecular weight: Translated: 43458; Mature: 43327
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSILMSLVGVAVLLGIGFLLSNNKKAISVRAVGGALAIQAAFGGFVLYVPWGKDILKTVS CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHEECCCEEEEECCCHHHHHHHH DGVSAVIGYGQNGINFLFGDLAQFKVGFIFAINVLPVIIFFSSLIAVLYYLGIMQWVIRI HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGGGLQKALGTSRTESMSATANIFVGQTEAPLVVRPFIPTMTQSELFAIMVGGLASIAGS HCCHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH VLAGYASMGVKIEYLVAASFMAAPGGLLMAKLMHPETENTKNEMDELPEDPDKPANVLDA HHHHHHHHCCEEEHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHH AAAGASSGMHLALNVGAMLIAFVGLIAMINGIIGGVGGWFGVEGLTLELILGYIFMPLAF HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHH LIGVPWNEALVAGSFIGQKIVVNEFVAYLNFAPYLKDIADGGIVVAETGAAMSDRTKAIV HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH SFALCGFANLSSIAILLGGLGAMAPNRRHDLAKLGIRAVIAGSLANLMSATLAGLFLAI HHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SILMSLVGVAVLLGIGFLLSNNKKAISVRAVGGALAIQAAFGGFVLYVPWGKDILKTVS HHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHEECCCEEEEECCCHHHHHHHH DGVSAVIGYGQNGINFLFGDLAQFKVGFIFAINVLPVIIFFSSLIAVLYYLGIMQWVIRI HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGGGLQKALGTSRTESMSATANIFVGQTEAPLVVRPFIPTMTQSELFAIMVGGLASIAGS HCCHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH VLAGYASMGVKIEYLVAASFMAAPGGLLMAKLMHPETENTKNEMDELPEDPDKPANVLDA HHHHHHHHCCEEEHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHH AAAGASSGMHLALNVGAMLIAFVGLIAMINGIIGGVGGWFGVEGLTLELILGYIFMPLAF HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHH LIGVPWNEALVAGSFIGQKIVVNEFVAYLNFAPYLKDIADGGIVVAETGAAMSDRTKAIV HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH SFALCGFANLSSIAILLGGLGAMAPNRRHDLAKLGIRAVIAGSLANLMSATLAGLFLAI HHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]