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The map label for this gene is yjjV [H]

Identifier: 119774107

GI number: 119774107

Start: 1173084

End: 1173866

Strand: Direct

Name: yjjV [H]

Synonym: Sama_0970

Alternate gene names: 119774107

Gene position: 1173084-1173866 (Clockwise)

Preceding gene: 119774106

Following gene: 119774108

Centisome position: 27.24

GC content: 46.74

Gene sequence:

>783_bases
TTGACGGCATCCCTGAGGCTCATTGACAGCCATGCACATCTGGATTTTCCTGAGTTTGACTCCGACCGAGACGCAGTGTT
TGCGGCCATGTCAAAGGCTAACATCTCGAGCTGCATTATTCCCGGTGTTTCTCCTGCCCATTGGGACAGGCAGCTTCAGG
TTGCCCATCAATATGCCTGTTCTTATGGATTGGGTCTGCATCCCTGGTATGTGGATGCCAATTGGCAGAGCGCCATAGAC
GATTTATCAGAACGATTGGACCGCCACCGCAGTGATAAGAAGTTGGTTGCTGTGGGTGAATGTGGTCTCGATAAGATCCG
CGATAATAACTGGCAATGGCAGCTGCAGGCGTTAGAAGCCCAGTTGTTGCTTGCCAGCAAACATCAATTGCCGGTTATTC
TCCATAGCGTTAAATCTCACGAACCACTGATTTCCCTGCTTTCCAGTCATTCGTTACCCCGCCGCGGTGTGATACATGGT
TTTTATGGCAGCGTTGAAGTAGCCAAGCGCTATATTGAGCTGGGATATCTACTGGGGATTGGTGGCTTATTGTTGAATGA
GGATGCAAAAAAGCTGCATAAAGTTGTTGAAACATTACCGATAGAAAGTTTCATTTGCGAGACAGATTCGCCCTCAATGG
CACCCAAAAGTGCTAGAGGAAGTCGTAATTCTCCCCTTTTAATTGGTCAAATTGTCACCAAAATGGCCCATTTGCAAAAA
AAATCCAATGTTCTAATATCAGAACGACTGTTAAGCAATGTGTCGCAACTGTTTGAGCTATAG

Upstream 100 bases:

>100_bases
AAAGAGTGACAGAAGCAGTGAATAAGGTTTTAGAGGGCTGATTTACTGCGCTTATCTGACTACAAGAATTACTTCATCAT
GAGTACCGGAGGAAAAACCT

Downstream 100 bases:

>100_bases
GTTTTTTCACTTAAACAGGTGTTTGTCGCAATGTTTATTGTTGCTAAGCATTTGAAATTTAAGTTCAAAAATTTGATCAA
AACGACGATTTTCAGCAAGG

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MTASLRLIDSHAHLDFPEFDSDRDAVFAAMSKANISSCIIPGVSPAHWDRQLQVAHQYACSYGLGLHPWYVDANWQSAID
DLSERLDRHRSDKKLVAVGECGLDKIRDNNWQWQLQALEAQLLLASKHQLPVILHSVKSHEPLISLLSSHSLPRRGVIHG
FYGSVEVAKRYIELGYLLGIGGLLLNEDAKKLHKVVETLPIESFICETDSPSMAPKSARGSRNSPLLIGQIVTKMAHLQK
KSNVLISERLLSNVSQLFEL

Sequences:

>Translated_260_residues
MTASLRLIDSHAHLDFPEFDSDRDAVFAAMSKANISSCIIPGVSPAHWDRQLQVAHQYACSYGLGLHPWYVDANWQSAID
DLSERLDRHRSDKKLVAVGECGLDKIRDNNWQWQLQALEAQLLLASKHQLPVILHSVKSHEPLISLLSSHSLPRRGVIHG
FYGSVEVAKRYIELGYLLGIGGLLLNEDAKKLHKVVETLPIESFICETDSPSMAPKSARGSRNSPLLIGQIVTKMAHLQK
KSNVLISERLLSNVSQLFEL
>Mature_259_residues
TASLRLIDSHAHLDFPEFDSDRDAVFAAMSKANISSCIIPGVSPAHWDRQLQVAHQYACSYGLGLHPWYVDANWQSAIDD
LSERLDRHRSDKKLVAVGECGLDKIRDNNWQWQLQALEAQLLLASKHQLPVILHSVKSHEPLISLLSSHSLPRRGVIHGF
YGSVEVAKRYIELGYLLGIGGLLLNEDAKKLHKVVETLPIESFICETDSPSMAPKSARGSRNSPLLIGQIVTKMAHLQKK
SNVLISERLLSNVSQLFEL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI226061853, Length=277, Percent_Identity=29.6028880866426, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI110349730, Length=271, Percent_Identity=28.7822878228782, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI110349734, Length=271, Percent_Identity=28.7822878228782, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI226061595, Length=235, Percent_Identity=30.6382978723404, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI225903439, Length=222, Percent_Identity=27.027027027027, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI14042943, Length=222, Percent_Identity=27.027027027027, Blast_Score=73, Evalue=2e-13,
Organism=Escherichia coli, GI87082439, Length=257, Percent_Identity=36.1867704280156, Blast_Score=175, Evalue=2e-45,
Organism=Escherichia coli, GI48994985, Length=261, Percent_Identity=28.3524904214559, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1787342, Length=260, Percent_Identity=25, Blast_Score=94, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17559024, Length=223, Percent_Identity=31.8385650224215, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI71980746, Length=249, Percent_Identity=26.5060240963855, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24648690, Length=290, Percent_Identity=24.4827586206897, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29014; Mature: 28882

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASLRLIDSHAHLDFPEFDSDRDAVFAAMSKANISSCIIPGVSPAHWDRQLQVAHQYAC
CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHH
SYGLGLHPWYVDANWQSAIDDLSERLDRHRSDKKLVAVGECGLDKIRDNNWQWQLQALEA
HCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHCCCCCEEEHHHHHH
QLLLASKHQLPVILHSVKSHEPLISLLSSHSLPRRGVIHGFYGSVEVAKRYIELGYLLGI
HHHHHCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHH
GGLLLNEDAKKLHKVVETLPIESFICETDSPSMAPKSARGSRNSPLLIGQIVTKMAHLQK
CHHHCCHHHHHHHHHHHHCCHHHHEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHH
KSNVLISERLLSNVSQLFEL
HCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TASLRLIDSHAHLDFPEFDSDRDAVFAAMSKANISSCIIPGVSPAHWDRQLQVAHQYAC
CCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHHH
SYGLGLHPWYVDANWQSAIDDLSERLDRHRSDKKLVAVGECGLDKIRDNNWQWQLQALEA
HCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHCCCCCEEEHHHHHH
QLLLASKHQLPVILHSVKSHEPLISLLSSHSLPRRGVIHGFYGSVEVAKRYIELGYLLGI
HHHHHCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHH
GGLLLNEDAKKLHKVVETLPIESFICETDSPSMAPKSARGSRNSPLLIGQIVTKMAHLQK
CHHHCCHHHHHHHHHHHHCCHHHHEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHH
KSNVLISERLLSNVSQLFEL
HCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]