| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774106
Identifier: 119774106
GI number: 119774106
Start: 1172778
End: 1173008
Strand: Direct
Name: 119774106
Synonym: Sama_0969
Alternate gene names: NA
Gene position: 1172778-1173008 (Clockwise)
Preceding gene: 119774105
Following gene: 119774107
Centisome position: 27.24
GC content: 53.25
Gene sequence:
>231_bases ATGTTGTCCTGGATAAAGCGTGGTTGGAAAGCGTATACGGATTGGTGTGACCGCATGGGACTGACACCGGAAAATCGACG CTGCTGTGCCCCCAGGTTGGAAGAGCCCGAACTCGCGTCAAAGCGCGCAAGACATTCCGGGGCAGAACATTCAGGGATGT CCCATGTCACGGTCGCATCTGACGAGTGCCTGACAAAAAACACTGCAAAGAGTGACAGAAGCAGTGAATAA
Upstream 100 bases:
>100_bases TTATCCCGACATTCAGTTTGCCAAGACCCGCGAGCATTAATCGCGGAACCAAAAGGCGGGGATACCCGCCTTTTTTATTG CCTGTTGTCTGGAGGTGAGT
Downstream 100 bases:
>100_bases GGTTTTAGAGGGCTGATTTACTGCGCTTATCTGACTACAAGAATTACTTCATCATGAGTACCGGAGGAAAAACCTTTGAC GGCATCCCTGAGGCTCATTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 76; Mature: 76
Protein sequence:
>76_residues MLSWIKRGWKAYTDWCDRMGLTPENRRCCAPRLEEPELASKRARHSGAEHSGMSHVTVASDECLTKNTAKSDRSSE
Sequences:
>Translated_76_residues MLSWIKRGWKAYTDWCDRMGLTPENRRCCAPRLEEPELASKRARHSGAEHSGMSHVTVASDECLTKNTAKSDRSSE >Mature_76_residues MLSWIKRGWKAYTDWCDRMGLTPENRRCCAPRLEEPELASKRARHSGAEHSGMSHVTVASDECLTKNTAKSDRSSE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8624; Mature: 8624
Theoretical pI: Translated: 8.35; Mature: 8.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 9.2 %Cys+Met (Translated Protein) 5.3 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 9.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSWIKRGWKAYTDWCDRMGLTPENRRCCAPRLEEPELASKRARHSGAEHSGMSHVTVAS CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECC DECLTKNTAKSDRSSE CCHHHCCCCCCCCCCC >Mature Secondary Structure MLSWIKRGWKAYTDWCDRMGLTPENRRCCAPRLEEPELASKRARHSGAEHSGMSHVTVAS CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECC DECLTKNTAKSDRSSE CCHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA