Click here to switch to the map view.

The map label for this gene is atoS [C]

Identifier: 119774045

GI number: 119774045

Start: 1097208

End: 1099250

Strand: Direct

Name: atoS [C]

Synonym: Sama_0908

Alternate gene names: 119774045

Gene position: 1097208-1099250 (Clockwise)

Preceding gene: 119774044

Following gene: 119774046

Centisome position: 25.48

GC content: 49.53

Gene sequence:

>2043_bases
ATGGAATCTGGTTCTGCAAACATGCTTTTTGATACCCGCCACGCATTACTTGATCCACTTTTTCTTGCCGAGCTGGGTAA
GATCCAGGCTCGCTTTATTCGCGGGGAGGATGTCATATTGCCTCTGTGCCGCATATTGGCCGAACAGAGTGGTGCACAGG
CCGTATTGGTGATAGATGCCTCCTCGAGCAATGCGCAAGATATGCCAGAGTCCGCAGCATGCTGGTGCCGCGACCCAGTG
CGTTACCTCACCCTCTGGAAAGATGTTCGTGACTGGCCCTTCTCACATCAGGAACCCTTGGTGCATTGCTGGCATAAGTT
TGTGGTGTGGCCGGTAAAACACACGGACTTGTTGATATTTTTCCATACACCTAAAGATGCCTGGTTTGGCTTTTTACTGA
GTTTCAGTGATCTGCTTGCCGATATTTTGATGGGAATACTGACTCTGCATGTTGAGCATTGGCGTGAGGGTGGGGACAGG
GAGACCAGAGGGGATATAGACAACATCATGTTCCGCTCCATTGTCAGAAACAGCGATGATTTCATTATGGTGGTTAAGCA
GTTTCACGATGGCAACAGTGAGATTGTCTATGTCAATGCCGCAGTGACCTGCATCAGTCTCTACCCACGCAGCGAACTCA
AAGGCATATCGCTGGGTAAACTGTTTCCTAAAGGTGTTCAGGCGTCCGGTAACGAGGTCGACCTTTACGACATCCTCTGC
TCCGGAAAGGACTTCAATGGCGAGGTTTACTGTACCAAGGCCAATGGGGAATTGGCGATTTTACACTTACATGTCATTGC
ACTGGAGCAGGATAGTAAAGGCGGGCTCTATGCACTTATTGGCCGTGATTATACCGACTTCAAGGCGATGGAAAAAACCG
TCAGCCGGGCGCAGAAGATGCAGGCTATTGGCCAGCTGGTTGGCGGAATTGCCCATGACTTCAATAATATTCTTGGGGTT
CTTAAGGGGAATCTCGAGCTGATACAGCTAAAAAACAAAGACGAACGGTTGGAAAACTACCTGACCACAGCGCTTAAATC
CTGTCAAAGGGGCACAGAACTCACCCGGCGGTTATTACAGTTTTCCCGGCAAGAACAGTTTAACGCTCAGCATTGTCAGG
TGAATGAGGTGATAGAGGGCTTAAGAGATCTCTTTGCCAAATCCCTGACCAGCCAGGTGGCCTTGAATGTGCAGCTGGCC
CCCTTTACCCGGGATGTGATGGTCGATAAGGGCGATTTGGAAGATGCACTGCTGAATCTGGTGATCAATGCCAAGGATGC
CATGAATGGAGAGGGAGCCTTAACCATAGCCACCGGGGAATCTGAGCTTGCTGGCTTTCTGCCGGGGATTGGTGAGCGGG
TATTGGTTGAGCCTAGCTGCTATGTGTGGATTTCGGTTACCGATGCAGGGCACGGTATCCCGATTCAGCTGCTTGATAAA
ATCTTTGAGCCTTTTTTTACTACCAAAGATAAGAGCAAGGGCACCGGTCTTGGACTCTCCATGGTCTATGGTTTTGTAAA
ACGATCCCGAGGCTACATGAATGTGCTGAAAACAGGGCCTCAAGGTACTGAAATTCGGCTCTGGTTTCCGGCTGTAACGA
TAAAACAGGCTGCCTCTGCCAAGGCTTTGGCTGCCGAAACGAGCATTCCGAGGGTGGATAGTCCTCTAAAAGCCCTGTTG
GTAGACGATGAACCAGAGCTGCTTCAGGTAATGCGGGACTATTGTGAACTCATGGGCATGGAGGTTGAAACCTTCAGCGA
TGGCGTTACTTTTAGAAACAACTTTCAAAGTAAGGTCCTGGATGCCGGGCTACTCATTACCGATGTACTGATGCCGGGTG
GCATTAATGGTTATGAATTGGCCAGCGATGTCATAGCAAAGCATCCCATGCCGGTGCTTTTGGTGTCGGGGTTTATTGAA
GATATCGGTGTGAACCGATATGAGGAAATGCCGTTCAAAGTGCTTCATAAGCCGTTTGATTTGCACGCATTTGCCAATGC
ATTGGCCGAAGTGGGTGTCCGTTTCATGGATAGGGAGAGTTAA

Upstream 100 bases:

>100_bases
CTTTTTTATGAAAAAGATCCCGCCAGCCATTTATCTTCAGCAATTCGGTAAAGCTTGACTAAGCTTTAGGTAAATAGCTG
AAGTTACGGGATTGACTGGA

Downstream 100 bases:

>100_bases
TCAGATGGAACAACTGAAAGTGTGGATTGTGGATGACGACAATGACTACTGCCATTTGATGCGGGAAGTATTGCAGGAAG
ACTATGACGTGCGCCTGTTT

Product: signal transduction histidine kinase-like protein

Products: NA

Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]

Number of amino acids: Translated: 680; Mature: 680

Protein sequence:

>680_residues
MESGSANMLFDTRHALLDPLFLAELGKIQARFIRGEDVILPLCRILAEQSGAQAVLVIDASSSNAQDMPESAACWCRDPV
RYLTLWKDVRDWPFSHQEPLVHCWHKFVVWPVKHTDLLIFFHTPKDAWFGFLLSFSDLLADILMGILTLHVEHWREGGDR
ETRGDIDNIMFRSIVRNSDDFIMVVKQFHDGNSEIVYVNAAVTCISLYPRSELKGISLGKLFPKGVQASGNEVDLYDILC
SGKDFNGEVYCTKANGELAILHLHVIALEQDSKGGLYALIGRDYTDFKAMEKTVSRAQKMQAIGQLVGGIAHDFNNILGV
LKGNLELIQLKNKDERLENYLTTALKSCQRGTELTRRLLQFSRQEQFNAQHCQVNEVIEGLRDLFAKSLTSQVALNVQLA
PFTRDVMVDKGDLEDALLNLVINAKDAMNGEGALTIATGESELAGFLPGIGERVLVEPSCYVWISVTDAGHGIPIQLLDK
IFEPFFTTKDKSKGTGLGLSMVYGFVKRSRGYMNVLKTGPQGTEIRLWFPAVTIKQAASAKALAAETSIPRVDSPLKALL
VDDEPELLQVMRDYCELMGMEVETFSDGVTFRNNFQSKVLDAGLLITDVLMPGGINGYELASDVIAKHPMPVLLVSGFIE
DIGVNRYEEMPFKVLHKPFDLHAFANALAEVGVRFMDRES

Sequences:

>Translated_680_residues
MESGSANMLFDTRHALLDPLFLAELGKIQARFIRGEDVILPLCRILAEQSGAQAVLVIDASSSNAQDMPESAACWCRDPV
RYLTLWKDVRDWPFSHQEPLVHCWHKFVVWPVKHTDLLIFFHTPKDAWFGFLLSFSDLLADILMGILTLHVEHWREGGDR
ETRGDIDNIMFRSIVRNSDDFIMVVKQFHDGNSEIVYVNAAVTCISLYPRSELKGISLGKLFPKGVQASGNEVDLYDILC
SGKDFNGEVYCTKANGELAILHLHVIALEQDSKGGLYALIGRDYTDFKAMEKTVSRAQKMQAIGQLVGGIAHDFNNILGV
LKGNLELIQLKNKDERLENYLTTALKSCQRGTELTRRLLQFSRQEQFNAQHCQVNEVIEGLRDLFAKSLTSQVALNVQLA
PFTRDVMVDKGDLEDALLNLVINAKDAMNGEGALTIATGESELAGFLPGIGERVLVEPSCYVWISVTDAGHGIPIQLLDK
IFEPFFTTKDKSKGTGLGLSMVYGFVKRSRGYMNVLKTGPQGTEIRLWFPAVTIKQAASAKALAAETSIPRVDSPLKALL
VDDEPELLQVMRDYCELMGMEVETFSDGVTFRNNFQSKVLDAGLLITDVLMPGGINGYELASDVIAKHPMPVLLVSGFIE
DIGVNRYEEMPFKVLHKPFDLHAFANALAEVGVRFMDRES
>Mature_680_residues
MESGSANMLFDTRHALLDPLFLAELGKIQARFIRGEDVILPLCRILAEQSGAQAVLVIDASSSNAQDMPESAACWCRDPV
RYLTLWKDVRDWPFSHQEPLVHCWHKFVVWPVKHTDLLIFFHTPKDAWFGFLLSFSDLLADILMGILTLHVEHWREGGDR
ETRGDIDNIMFRSIVRNSDDFIMVVKQFHDGNSEIVYVNAAVTCISLYPRSELKGISLGKLFPKGVQASGNEVDLYDILC
SGKDFNGEVYCTKANGELAILHLHVIALEQDSKGGLYALIGRDYTDFKAMEKTVSRAQKMQAIGQLVGGIAHDFNNILGV
LKGNLELIQLKNKDERLENYLTTALKSCQRGTELTRRLLQFSRQEQFNAQHCQVNEVIEGLRDLFAKSLTSQVALNVQLA
PFTRDVMVDKGDLEDALLNLVINAKDAMNGEGALTIATGESELAGFLPGIGERVLVEPSCYVWISVTDAGHGIPIQLLDK
IFEPFFTTKDKSKGTGLGLSMVYGFVKRSRGYMNVLKTGPQGTEIRLWFPAVTIKQAASAKALAAETSIPRVDSPLKALL
VDDEPELLQVMRDYCELMGMEVETFSDGVTFRNNFQSKVLDAGLLITDVLMPGGINGYELASDVIAKHPMPVLLVSGFIE
DIGVNRYEEMPFKVLHKPFDLHAFANALAEVGVRFMDRES

Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=383, Percent_Identity=26.3707571801567, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1790436, Length=243, Percent_Identity=28.3950617283951, Blast_Score=93, Evalue=7e-20,
Organism=Escherichia coli, GI1790300, Length=240, Percent_Identity=29.1666666666667, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR011006
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 75697; Mature: 75697

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN ; PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESGSANMLFDTRHALLDPLFLAELGKIQARFIRGEDVILPLCRILAEQSGAQAVLVIDA
CCCCCCCEEEECHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCCCCEEEEEEC
SSSNAQDMPESAACWCRDPVRYLTLWKDVRDWPFSHQEPLVHCWHKFVVWPVKHTDLLIF
CCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEECCCEEEEE
FHTPKDAWFGFLLSFSDLLADILMGILTLHVEHWREGGDRETRGDIDNIMFRSIVRNSDD
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC
FIMVVKQFHDGNSEIVYVNAAVTCISLYPRSELKGISLGKLFPKGVQASGNEVDLYDILC
EEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCCHHCCCCCCCCCCCCEEEEEEEEE
SGKDFNGEVYCTKANGELAILHLHVIALEQDSKGGLYALIGRDYTDFKAMEKTVSRAQKM
CCCCCCCEEEEEECCCCEEEEEEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHH
QAIGQLVGGIAHDFNNILGVLKGNLELIQLKNKDERLENYLTTALKSCQRGTELTRRLLQ
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSRQEQFNAQHCQVNEVIEGLRDLFAKSLTSQVALNVQLAPFTRDVMVDKGDLEDALLNL
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHEECCCCHHHHHHHH
VINAKDAMNGEGALTIATGESELAGFLPGIGERVLVEPSCYVWISVTDAGHGIPIQLLDK
HEECCCCCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCEEEEEEEECCCCCCHHHHHHH
IFEPFFTTKDKSKGTGLGLSMVYGFVKRSRGYMNVLKTGPQGTEIRLWFPAVTIKQAASA
HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCHHHHHHHCH
KALAAETSIPRVDSPLKALLVDDEPELLQVMRDYCELMGMEVETFSDGVTFRNNFQSKVL
HHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHH
DAGLLITDVLMPGGINGYELASDVIAKHPMPVLLVSGFIEDIGVNRYEEMPFKVLHKPFD
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCHHHHCCCCH
LHAFANALAEVGVRFMDRES
HHHHHHHHHHHCHHHHCCCC
>Mature Secondary Structure
MESGSANMLFDTRHALLDPLFLAELGKIQARFIRGEDVILPLCRILAEQSGAQAVLVIDA
CCCCCCCEEEECHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCCCCEEEEEEC
SSSNAQDMPESAACWCRDPVRYLTLWKDVRDWPFSHQEPLVHCWHKFVVWPVKHTDLLIF
CCCCCCCCCCHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEECCCEEEEE
FHTPKDAWFGFLLSFSDLLADILMGILTLHVEHWREGGDRETRGDIDNIMFRSIVRNSDD
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCC
FIMVVKQFHDGNSEIVYVNAAVTCISLYPRSELKGISLGKLFPKGVQASGNEVDLYDILC
EEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCCHHCCCCCCCCCCCCEEEEEEEEE
SGKDFNGEVYCTKANGELAILHLHVIALEQDSKGGLYALIGRDYTDFKAMEKTVSRAQKM
CCCCCCCEEEEEECCCCEEEEEEEEEEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHH
QAIGQLVGGIAHDFNNILGVLKGNLELIQLKNKDERLENYLTTALKSCQRGTELTRRLLQ
HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSRQEQFNAQHCQVNEVIEGLRDLFAKSLTSQVALNVQLAPFTRDVMVDKGDLEDALLNL
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCHHHEECCCCHHHHHHHH
VINAKDAMNGEGALTIATGESELAGFLPGIGERVLVEPSCYVWISVTDAGHGIPIQLLDK
HEECCCCCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCEEEEEEEECCCCCCHHHHHHH
IFEPFFTTKDKSKGTGLGLSMVYGFVKRSRGYMNVLKTGPQGTEIRLWFPAVTIKQAASA
HHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCHHHHHHHCH
KALAAETSIPRVDSPLKALLVDDEPELLQVMRDYCELMGMEVETFSDGVTFRNNFQSKVL
HHHHHCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHH
DAGLLITDVLMPGGINGYELASDVIAKHPMPVLLVSGFIEDIGVNRYEEMPFKVLHKPFD
HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCHHHHCCCCH
LHAFANALAEVGVRFMDRES
HHHHHHHHHHHCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA