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The map label for this gene is ntrC [H]

Identifier: 119774046

GI number: 119774046

Start: 1099255

End: 1100349

Strand: Direct

Name: ntrC [H]

Synonym: Sama_0909

Alternate gene names: 119774046

Gene position: 1099255-1100349 (Clockwise)

Preceding gene: 119774045

Following gene: 119774047

Centisome position: 25.53

GC content: 47.95

Gene sequence:

>1095_bases
ATGGAACAACTGAAAGTGTGGATTGTGGATGACGACAATGACTACTGCCATTTGATGCGGGAAGTATTGCAGGAAGACTA
TGACGTGCGCCTGTTTCTGGATGCAGACTCTTATTCAAAAGCTATGGTGGCAGCCAAGCCGGACATCATCCTGATGGACA
TCAATTTGCCCGATGTGTCGGGAATTGAACTGTGCAAGTCGCTTCAGACCCATGGAATAGACAGCGCAGTTATTTTTGTT
TCGGGAATGAATACCCTCGAAGAGCGGCTTAAAGCCTATGAAGCCGGGGGAGTTGACTTCATTGCCAAACCTTTTGAACT
CAAAGAGTTGATGGCGAAAACCAATGCGGTGGCCAACTATCAGCACAAAAAAAGGGCGCTCGCTGAGGCTGAAAGCTTTT
CGCGCAATATGGCATTCCAATCAATGAATGAGTCGTCCCAATACGGGGCCGTGTTGCAGTTTTTCCGTCAGTGCTTCCTG
TGTCAGGACTATCAAGCGCTCGCCGATGCGTTTTTTGCCTTGATGATGCAGCTCGATTTAAAAACCTGTCTTGAGATTCG
GGTGGATGAAACCCTGTACTTTGTGCCCGAGCACATGGCCATCAGCCCCATTGAAGCCAATATTTTTGAACTGCTCGATC
ATCAGGGGCGTTTATTTGATTTCGGCTCCCGAACCATCTGTAACGACAAGCATGTTTCCTTTTTAATCAAAAATATGCCG
CTGCAAGATGAAGTGTTGTACGGTCGTTTGAGGGATGTCATCGCCGTTGTCGTTGAAGGGTTGGAAGCCCGTATTATTGA
TATTCAGCGTCAACAAACGCTGCAACGTGTAGTGACTGACATCAGGCGGCTGTTGGCAGGCTTGTCGGACAGCATCCATG
AGAGTGATGAGCAGTTTTGCCATGCGCTGTCCAATATCACCACCGAAATTCGGGCAAGTTTTCATGTATTGGACATGACG
GAGGAGCAGGAGAGCTTTTTCACCGGGTTGGTTGAGCGAAATCTGCGGGAAGCCAACTCGGCGAGCAATTCTTTTTTGCG
TTTGCAAACCTCATTAAAGTCTGTTGTTGCTGTGTTAGAGCGCAATACTGCATGA

Upstream 100 bases:

>100_bases
ATGCCGTTCAAAGTGCTTCATAAGCCGTTTGATTTGCACGCATTTGCCAATGCATTGGCCGAAGTGGGTGTCCGTTTCAT
GGATAGGGAGAGTTAATCAG

Downstream 100 bases:

>100_bases
GCTAAAAGCTTGATCTCTATCACGTTGGTCTTTTAGGACCCTTTGTTATAGTGGTTAAGCGTCTGACGCTTTACTAGTAT
TGAATAAGGCAGGCACTGGC

Product: response regulator receiver protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MEQLKVWIVDDDNDYCHLMREVLQEDYDVRLFLDADSYSKAMVAAKPDIILMDINLPDVSGIELCKSLQTHGIDSAVIFV
SGMNTLEERLKAYEAGGVDFIAKPFELKELMAKTNAVANYQHKKRALAEAESFSRNMAFQSMNESSQYGAVLQFFRQCFL
CQDYQALADAFFALMMQLDLKTCLEIRVDETLYFVPEHMAISPIEANIFELLDHQGRLFDFGSRTICNDKHVSFLIKNMP
LQDEVLYGRLRDVIAVVVEGLEARIIDIQRQQTLQRVVTDIRRLLAGLSDSIHESDEQFCHALSNITTEIRASFHVLDMT
EEQESFFTGLVERNLREANSASNSFLRLQTSLKSVVAVLERNTA

Sequences:

>Translated_364_residues
MEQLKVWIVDDDNDYCHLMREVLQEDYDVRLFLDADSYSKAMVAAKPDIILMDINLPDVSGIELCKSLQTHGIDSAVIFV
SGMNTLEERLKAYEAGGVDFIAKPFELKELMAKTNAVANYQHKKRALAEAESFSRNMAFQSMNESSQYGAVLQFFRQCFL
CQDYQALADAFFALMMQLDLKTCLEIRVDETLYFVPEHMAISPIEANIFELLDHQGRLFDFGSRTICNDKHVSFLIKNMP
LQDEVLYGRLRDVIAVVVEGLEARIIDIQRQQTLQRVVTDIRRLLAGLSDSIHESDEQFCHALSNITTEIRASFHVLDMT
EEQESFFTGLVERNLREANSASNSFLRLQTSLKSVVAVLERNTA
>Mature_364_residues
MEQLKVWIVDDDNDYCHLMREVLQEDYDVRLFLDADSYSKAMVAAKPDIILMDINLPDVSGIELCKSLQTHGIDSAVIFV
SGMNTLEERLKAYEAGGVDFIAKPFELKELMAKTNAVANYQHKKRALAEAESFSRNMAFQSMNESSQYGAVLQFFRQCFL
CQDYQALADAFFALMMQLDLKTCLEIRVDETLYFVPEHMAISPIEANIFELLDHQGRLFDFGSRTICNDKHVSFLIKNMP
LQDEVLYGRLRDVIAVVVEGLEARIIDIQRQQTLQRVVTDIRRLLAGLSDSIHESDEQFCHALSNITTEIRASFHVLDMT
EEQESFFTGLVERNLREANSASNSFLRLQTSLKSVVAVLERNTA

Specific function: Member of the two-component regulatory system ntrB/ntrC involved in the activation of nitrogen assimilatory genes such as glnA. NtrC is phosphorylated by ntrB and interacts with sigma-54 [H]

COG id: COG0784

COG function: function code T; FOG: CheY-like receiver

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1790860, Length=118, Percent_Identity=29.6610169491525, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1790299, Length=127, Percent_Identity=26.7716535433071, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR010114
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 41509; Mature: 41509

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQLKVWIVDDDNDYCHLMREVLQEDYDVRLFLDADSYSKAMVAAKPDIILMDINLPDVS
CCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCEEEEECCCCCCC
GIELCKSLQTHGIDSAVIFVSGMNTLEERLKAYEAGGVDFIAKPFELKELMAKTNAVANY
HHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHH
QHKKRALAEAESFSRNMAFQSMNESSQYGAVLQFFRQCFLCQDYQALADAFFALMMQLDL
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KTCLEIRVDETLYFVPEHMAISPIEANIFELLDHQGRLFDFGSRTICNDKHVSFLIKNMP
HHHHHHEECCEEEECCCCCEECCHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHCCC
LQDEVLYGRLRDVIAVVVEGLEARIIDIQRQQTLQRVVTDIRRLLAGLSDSIHESDEQFC
CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HALSNITTEIRASFHVLDMTEEQESFFTGLVERNLREANSASNSFLRLQTSLKSVVAVLE
HHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RNTA
CCCC
>Mature Secondary Structure
MEQLKVWIVDDDNDYCHLMREVLQEDYDVRLFLDADSYSKAMVAAKPDIILMDINLPDVS
CCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCEEECCCEEEEECCCCCCC
GIELCKSLQTHGIDSAVIFVSGMNTLEERLKAYEAGGVDFIAKPFELKELMAKTNAVANY
HHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHH
QHKKRALAEAESFSRNMAFQSMNESSQYGAVLQFFRQCFLCQDYQALADAFFALMMQLDL
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
KTCLEIRVDETLYFVPEHMAISPIEANIFELLDHQGRLFDFGSRTICNDKHVSFLIKNMP
HHHHHHEECCEEEECCCCCEECCHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHCCC
LQDEVLYGRLRDVIAVVVEGLEARIIDIQRQQTLQRVVTDIRRLLAGLSDSIHESDEQFC
CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HALSNITTEIRASFHVLDMTEEQESFFTGLVERNLREANSASNSFLRLQTSLKSVVAVLE
HHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
RNTA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8095910 [H]