| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is exeA [H]
Identifier: 119773972
GI number: 119773972
Start: 1018134
End: 1019975
Strand: Direct
Name: exeA [H]
Synonym: Sama_0835
Alternate gene names: 119773972
Gene position: 1018134-1019975 (Clockwise)
Preceding gene: 119773969
Following gene: 119773973
Centisome position: 23.64
GC content: 55.86
Gene sequence:
>1842_bases ATGTACAAGGCGTTTTATGGGTTAAAGGACAACCCATTTTCCATTGCACCCAATCCAACGTATCTGTTCCTCAGTGACAG GCACCGAGAGGCACTTGCACACCTGACCTATGGGCTTGGTGAAACCGGCGGTTTTGTGCTGCTCACCGGCGAAGTTGGCA CCGGCAAAACCACGGTCTCCCGCTGCTTATTGCGTCAATTGCCCGATACAACTGATACCGCATTTATCCTGAACCCGGCC CTGACCGAACTTGAGCTGCTGGCAACCCTTTGTGATGAACTCAAGATCCCCTATGGTGAATCCCCCAGTCTTAAGCGGCT GACTGACCTCATCAGTGGCTTTTTACTTAAGAACCACAACGCCGGTCGTAATACAGTACTGATTATTGATGAAGCACAGC ACCTCAAAGCGGAGGTGCTCGAGCAGCTCAGGCTGCTGACCAACCTCGAAACCGATACCAAAAAGCTGCTGCAGGTGATC TTGATTGGCCAACCTGAGCTGCAACAACTCCTCAAGCGTCAGGAGCTCAGACAGCTCGCTCAGCGCATTACAGCCCGTTA TCATCTATTACCCCTTACCGCAGAAGAAGTCGGCCTGTACGTGCAGCACAGGCTGCAGGTGGCTGGGAGGTTTGAACCCC TGTTCAACGCAGGTGCCATAAAGGCGTTGCACAAGGCCAGTGGCGGTATTCCCCGGATCATTAATCTGCTGTGCGAGAGG GCTCTAATGGCGGGCTTTGCCCAGAGTCGGGTGCCCATCAATAAGCAGATGGTGCGTCAGGCTGCAGTTGAAGTTCTGGG GCTCGAACCCCAAAGACCATCCTGGTACGAGCGCCCACTTCCTATGACGCTGGCCACGGCCCTGACATTTGGCGTGGCGC TGTATGGCTTTAATTACCTTAATCAGCCCGTGACGGCGGCCACATCGCTCGCGTTGCCCATTGCGGACTCACCTGTGCAG GGGGCCCCTGTGCAGGCAGCGCCTGAGTCGCTGCAGCCTGAGTTGCAGCCGACTGCAACAGTTAATCAAAGCACGATCGA GCCCTTGCAACCGGATTCGTCTGGGGTAACCTCAGGCGCACAATCTGAAACGGCGATGGAGAATTTGGCAGATATTGCCA CGGATAGCACGCTACAAAACCAGGTCTTGGCACAGAGCTCGCCCATCAGCCGCATCACGGATGCCGGGGCAGAGCTTGCC GAGCTTGAAGCCCGTCAGGCAAAAGTGCGCGAACGGGTGCTGACGGACGCTGTGGCACAAAGCCGCAGTTTGGATACGGC CTATGCTGCTCTCTTCGGCGCCTGGGGCCTGGCGCCGATAAAAGATCTCAGTCCCTGTGAGTCGGCCCGTGAGCAAGGGC TGTCCTGTTTTCAGCAACAGGGGACCTGGTTTAATTTGGTTAAGCTTAACTATCCGGCGGTGGCCTACATGATGGATGAC GCCGGTGGCGAGTTCTTCGTCACCGTGATTGAGCGGGATGGAGACGAGCTGCTGGTGCAGCTTGCCGAGCAGCAGCTTTG GGTTAACCGGGACTGGTTCAATCGCCACTTCACCGGCACCTTTGAACTCTTTTGGCAGGCGCCTGTCTACAGCCCTCGGG AAATCGGGATTGCGTCACCACAGCCAGAGGTGCAATGGCTGGAAAATGGTTTGGCCAAGGTCGACAAAATCACCCCAAGA TTGGTCAATGAATTTGATACGGAGCTTGAAAATCGCCTCAAGTTGTTCCAGCGTCAGCATGGCCTCAAGGCCGATGGTAT CGCCGGCAGTCAAACTCTGCAGCAACTCAACCTGTACCTGAGCAATGAAGGTCCACGCCTGGTGCAGGGAGGGCTGTACT GA
Upstream 100 bases:
>100_bases TTGACATTGACCGCCACTGGCATTACCTTGGCTCCACTCGCTGTATTCAGGTAGCCAGGGCTGCTGGCACTGGGCGGTTT CCAAGAAGGATAGATAAGGC
Downstream 100 bases:
>100_bases TGTCTATCCTGCTTGACGCAGTAACGCGAAGTAAACAACAGGAGAACGGCTTCGACCCTGTCTCCAGTCCGCGCCCACAG TATCGACCCGAAAAGGCGCC
Product: peptidoglycan binding domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 613; Mature: 613
Protein sequence:
>613_residues MYKAFYGLKDNPFSIAPNPTYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVSRCLLRQLPDTTDTAFILNPA LTELELLATLCDELKIPYGESPSLKRLTDLISGFLLKNHNAGRNTVLIIDEAQHLKAEVLEQLRLLTNLETDTKKLLQVI LIGQPELQQLLKRQELRQLAQRITARYHLLPLTAEEVGLYVQHRLQVAGRFEPLFNAGAIKALHKASGGIPRIINLLCER ALMAGFAQSRVPINKQMVRQAAVEVLGLEPQRPSWYERPLPMTLATALTFGVALYGFNYLNQPVTAATSLALPIADSPVQ GAPVQAAPESLQPELQPTATVNQSTIEPLQPDSSGVTSGAQSETAMENLADIATDSTLQNQVLAQSSPISRITDAGAELA ELEARQAKVRERVLTDAVAQSRSLDTAYAALFGAWGLAPIKDLSPCESAREQGLSCFQQQGTWFNLVKLNYPAVAYMMDD AGGEFFVTVIERDGDELLVQLAEQQLWVNRDWFNRHFTGTFELFWQAPVYSPREIGIASPQPEVQWLENGLAKVDKITPR LVNEFDTELENRLKLFQRQHGLKADGIAGSQTLQQLNLYLSNEGPRLVQGGLY
Sequences:
>Translated_613_residues MYKAFYGLKDNPFSIAPNPTYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVSRCLLRQLPDTTDTAFILNPA LTELELLATLCDELKIPYGESPSLKRLTDLISGFLLKNHNAGRNTVLIIDEAQHLKAEVLEQLRLLTNLETDTKKLLQVI LIGQPELQQLLKRQELRQLAQRITARYHLLPLTAEEVGLYVQHRLQVAGRFEPLFNAGAIKALHKASGGIPRIINLLCER ALMAGFAQSRVPINKQMVRQAAVEVLGLEPQRPSWYERPLPMTLATALTFGVALYGFNYLNQPVTAATSLALPIADSPVQ GAPVQAAPESLQPELQPTATVNQSTIEPLQPDSSGVTSGAQSETAMENLADIATDSTLQNQVLAQSSPISRITDAGAELA ELEARQAKVRERVLTDAVAQSRSLDTAYAALFGAWGLAPIKDLSPCESAREQGLSCFQQQGTWFNLVKLNYPAVAYMMDD AGGEFFVTVIERDGDELLVQLAEQQLWVNRDWFNRHFTGTFELFWQAPVYSPREIGIASPQPEVQWLENGLAKVDKITPR LVNEFDTELENRLKLFQRQHGLKADGIAGSQTLQQLNLYLSNEGPRLVQGGLY >Mature_613_residues MYKAFYGLKDNPFSIAPNPTYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVSRCLLRQLPDTTDTAFILNPA LTELELLATLCDELKIPYGESPSLKRLTDLISGFLLKNHNAGRNTVLIIDEAQHLKAEVLEQLRLLTNLETDTKKLLQVI LIGQPELQQLLKRQELRQLAQRITARYHLLPLTAEEVGLYVQHRLQVAGRFEPLFNAGAIKALHKASGGIPRIINLLCER ALMAGFAQSRVPINKQMVRQAAVEVLGLEPQRPSWYERPLPMTLATALTFGVALYGFNYLNQPVTAATSLALPIADSPVQ GAPVQAAPESLQPELQPTATVNQSTIEPLQPDSSGVTSGAQSETAMENLADIATDSTLQNQVLAQSSPISRITDAGAELA ELEARQAKVRERVLTDAVAQSRSLDTAYAALFGAWGLAPIKDLSPCESAREQGLSCFQQQGTWFNLVKLNYPAVAYMMDD AGGEFFVTVIERDGDELLVQLAEQQLWVNRDWFNRHFTGTFELFWQAPVYSPREIGIASPQPEVQWLENGLAKVDKITPR LVNEFDTELENRLKLFQRQHGLKADGIAGSQTLQQLNLYLSNEGPRLVQGGLY
Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]
COG id: COG3267
COG function: function code U; Type II secretory pathway, component ExeA (predicted ATPase)
Gene ontology:
Cell location: Cytoplasm. Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the exeA family [H]
Homologues:
Organism=Escherichia coli, GI1789720, Length=171, Percent_Identity=30.4093567251462, Blast_Score=79, Evalue=8e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR003959 - InterPro: IPR002477 [H]
Pfam domain/function: PF00004 AAA; PF01471 PG_binding_1 [H]
EC number: NA
Molecular weight: Translated: 67704; Mature: 67704
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKAFYGLKDNPFSIAPNPTYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVS CCCCEECCCCCCCEECCCCEEEEEECHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH RCLLRQLPDTTDTAFILNPALTELELLATLCDELKIPYGESPSLKRLTDLISGFLLKNHN HHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC AGRNTVLIIDEAQHLKAEVLEQLRLLTNLETDTKKLLQVILIGQPELQQLLKRQELRQLA CCCCEEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH QRITARYHLLPLTAEEVGLYVQHRLQVAGRFEPLFNAGAIKALHKASGGIPRIINLLCER HHHHHHHEEEECCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHH ALMAGFAQSRVPINKQMVRQAAVEVLGLEPQRPSWYERPLPMTLATALTFGVALYGFNYL HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH NQPVTAATSLALPIADSPVQGAPVQAAPESLQPELQPTATVNQSTIEPLQPDSSGVTSGA CCCHHHHHHEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QSETAMENLADIATDSTLQNQVLAQSSPISRITDAGAELAELEARQAKVRERVLTDAVAQ CHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH SRSLDTAYAALFGAWGLAPIKDLSPCESAREQGLSCFQQQGTWFNLVKLNYPAVAYMMDD HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEEC AGGEFFVTVIERDGDELLVQLAEQQLWVNRDWFNRHFTGTFELFWQAPVYSPREIGIASP CCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEEECCCCCCHHCCCCCC QPEVQWLENGLAKVDKITPRLVNEFDTELENRLKLFQRQHGLKADGIAGSQTLQQLNLYL CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC SNEGPRLVQGGLY CCCCCCCCCCCCC >Mature Secondary Structure MYKAFYGLKDNPFSIAPNPTYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVS CCCCEECCCCCCCEECCCCEEEEEECHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHH RCLLRQLPDTTDTAFILNPALTELELLATLCDELKIPYGESPSLKRLTDLISGFLLKNHN HHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCC AGRNTVLIIDEAQHLKAEVLEQLRLLTNLETDTKKLLQVILIGQPELQQLLKRQELRQLA CCCCEEEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH QRITARYHLLPLTAEEVGLYVQHRLQVAGRFEPLFNAGAIKALHKASGGIPRIINLLCER HHHHHHHEEEECCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCHHHHHHHHHHH ALMAGFAQSRVPINKQMVRQAAVEVLGLEPQRPSWYERPLPMTLATALTFGVALYGFNYL HHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH NQPVTAATSLALPIADSPVQGAPVQAAPESLQPELQPTATVNQSTIEPLQPDSSGVTSGA CCCHHHHHHEEECCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QSETAMENLADIATDSTLQNQVLAQSSPISRITDAGAELAELEARQAKVRERVLTDAVAQ CHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH SRSLDTAYAALFGAWGLAPIKDLSPCESAREQGLSCFQQQGTWFNLVKLNYPAVAYMMDD HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEEC AGGEFFVTVIERDGDELLVQLAEQQLWVNRDWFNRHFTGTFELFWQAPVYSPREIGIASP CCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHCCCCCEEEEEEEECCCCCCHHCCCCCC QPEVQWLENGLAKVDKITPRLVNEFDTELENRLKLFQRQHGLKADGIAGSQTLQQLNLYL CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC SNEGPRLVQGGLY CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7961440 [H]