| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773955
Identifier: 119773955
GI number: 119773955
Start: 1002432
End: 1002983
Strand: Direct
Name: 119773955
Synonym: Sama_0818
Alternate gene names: NA
Gene position: 1002432-1002983 (Clockwise)
Preceding gene: 119773954
Following gene: 119773956
Centisome position: 23.28
GC content: 53.08
Gene sequence:
>552_bases ATGGCGATAACATCAGCAAGCAAAGCATTGAAAAGGCTGTCAGGTGCGCTACTGCTGGTTGCACTCGGTTCCTTTACGGG AGCCGCCATCAGTGCGGATAACCCACTCGATGGCATGCACCGTGTGGGCAAAGGCAAAATGAATTGGCTGTGGCTTGAGC TTTACCATGCCAGCCTTTTTACGGTCGATGGTCAATACCAGCACGGGCGCTATCCTCAGGCACTGGAAATTCAGTACTCG CGGGATATCGAAGCCAAAGACTTGCTGGATGCCACTGGCAGCGAATGGCAAAAGCAGGGTTTGAATGAGGCCCAGGTGAA AGCGTTTTTGGCTAAACTCGCCCCCCTGTGGGTGGATGTGCAGCGGGGCGATACCCTGCTGCTGGTGGCAAGCGATGAAA GCCATGGCGAATTTTTCCATAACGGCCAATCCCTTGGCAAAGTGAATGATACAGGTTTGATGCAAGCCTTTTTGGGAATT TGGCTTAGAGACGACACCAGTGAACCCACCCTCAGGGCACAGCTTTTGGGAGAAACCTCATGCGACTGCTAG
Upstream 100 bases:
>100_bases ATCTGCTCACCTTCCTGCTTATCGCGCCCCTCTGGGGGACGATTATTCCCGGCTTCTTTTGGCTGCAGCAAAGGCTGCCA GGCAACGGAGACTACCTATC
Downstream 100 bases:
>100_bases CGTTACTACTTTGTGCAACACTGCTTTGGGGCTGCGAGAGTGCCGATATTGACGATTATCGCGGCGCAAGTAACGAACTG AAGCTGGATACATTTTTCGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 183; Mature: 182
Protein sequence:
>183_residues MAITSASKALKRLSGALLLVALGSFTGAAISADNPLDGMHRVGKGKMNWLWLELYHASLFTVDGQYQHGRYPQALEIQYS RDIEAKDLLDATGSEWQKQGLNEAQVKAFLAKLAPLWVDVQRGDTLLLVASDESHGEFFHNGQSLGKVNDTGLMQAFLGI WLRDDTSEPTLRAQLLGETSCDC
Sequences:
>Translated_183_residues MAITSASKALKRLSGALLLVALGSFTGAAISADNPLDGMHRVGKGKMNWLWLELYHASLFTVDGQYQHGRYPQALEIQYS RDIEAKDLLDATGSEWQKQGLNEAQVKAFLAKLAPLWVDVQRGDTLLLVASDESHGEFFHNGQSLGKVNDTGLMQAFLGI WLRDDTSEPTLRAQLLGETSCDC >Mature_182_residues AITSASKALKRLSGALLLVALGSFTGAAISADNPLDGMHRVGKGKMNWLWLELYHASLFTVDGQYQHGRYPQALEIQYSR DIEAKDLLDATGSEWQKQGLNEAQVKAFLAKLAPLWVDVQRGDTLLLVASDESHGEFFHNGQSLGKVNDTGLMQAFLGIW LRDDTSEPTLRAQLLGETSCDC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20065; Mature: 19934
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAITSASKALKRLSGALLLVALGSFTGAAISADNPLDGMHRVGKGKMNWLWLELYHASLF CCCCHHHHHHHHHHHHEEEEEHHCCCCCEEECCCCHHHHHHHCCCCCCEEEEEEEEEEEE TVDGQYQHGRYPQALEIQYSRDIEAKDLLDATGSEWQKQGLNEAQVKAFLAKLAPLWVDV EECCCCCCCCCCCEEEEEECCCCCHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHEEEE QRGDTLLLVASDESHGEFFHNGQSLGKVNDTGLMQAFLGIWLRDDTSEPTLRAQLLGETS ECCCEEEEEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHEEECCCCCCHHHHHECCCCC CDC CCC >Mature Secondary Structure AITSASKALKRLSGALLLVALGSFTGAAISADNPLDGMHRVGKGKMNWLWLELYHASLF CCCHHHHHHHHHHHHEEEEEHHCCCCCEEECCCCHHHHHHHCCCCCCEEEEEEEEEEEE TVDGQYQHGRYPQALEIQYSRDIEAKDLLDATGSEWQKQGLNEAQVKAFLAKLAPLWVDV EECCCCCCCCCCCEEEEEECCCCCHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHEEEE QRGDTLLLVASDESHGEFFHNGQSLGKVNDTGLMQAFLGIWLRDDTSEPTLRAQLLGETS ECCCEEEEEECCCCCCHHHHCCCCCCCCCCHHHHHHHHHHEEECCCCCCHHHHHECCCCC CDC CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]