| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is 119773720
Identifier: 119773720
GI number: 119773720
Start: 726973
End: 727401
Strand: Direct
Name: 119773720
Synonym: Sama_0582
Alternate gene names: NA
Gene position: 726973-727401 (Clockwise)
Preceding gene: 119773719
Following gene: 119773721
Centisome position: 16.88
GC content: 47.32
Gene sequence:
>429_bases ATGAAACGATTAATCATCAGTTTGATAGCTTGGTTACTCGTCTGCTTTCCTGTCAGAGCAGACGATGCCCTGTATGTGGT GGTGAATACGACAAACGGCATTGAAAATTTGAGTCATCATGAAGTGGTAGATATTTTTATGGGACGCGACCGAACGTTTC CGGACGGAAACAAGGTCACAGTATTCGATAACAGCAGTGACACCGAGACCCGGGCATTATTCTACAGACAGCTGGTCAAT CGCAGCCTGGCACAGGTAAGCAGTTACTGGGCACGATTGCAGTTTTCGGCACGAGTCACACAACCCAGGGAAATAGGCCA GCGGCAAGCCTTGCTTGAGTTGATGAACAGCACCCCCTCAGGTATTACTTTTGTCAAAAGCACTGAACTGGACCCGGCAT TAAAGGTGGTATACAAATTTGATCCCTAA
Upstream 100 bases:
>100_bases TAGACCCCAAGGGTTCGAGTCTCTGGGTTCGGGCATATCCCATGGGCCATGATGACAGGGTCAATCTGTTTTCCGTTAAT CTGAGTTTTACCTTCTGACT
Downstream 100 bases:
>100_bases TCGCCAGAAGCTTTATGTCAAAGTTGCTGTTGCCATCGCGGTGGGAGCCTTTCTCGCGGCAGTGGTCGCCTGCCTCTATT TTTTCTGGGATGCGCGGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 142; Mature: 142
Protein sequence:
>142_residues MKRLIISLIAWLLVCFPVRADDALYVVVNTTNGIENLSHHEVVDIFMGRDRTFPDGNKVTVFDNSSDTETRALFYRQLVN RSLAQVSSYWARLQFSARVTQPREIGQRQALLELMNSTPSGITFVKSTELDPALKVVYKFDP
Sequences:
>Translated_142_residues MKRLIISLIAWLLVCFPVRADDALYVVVNTTNGIENLSHHEVVDIFMGRDRTFPDGNKVTVFDNSSDTETRALFYRQLVN RSLAQVSSYWARLQFSARVTQPREIGQRQALLELMNSTPSGITFVKSTELDPALKVVYKFDP >Mature_142_residues MKRLIISLIAWLLVCFPVRADDALYVVVNTTNGIENLSHHEVVDIFMGRDRTFPDGNKVTVFDNSSDTETRALFYRQLVN RSLAQVSSYWARLQFSARVTQPREIGQRQALLELMNSTPSGITFVKSTELDPALKVVYKFDP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16182; Mature: 16182
Theoretical pI: Translated: 8.47; Mature: 8.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLIISLIAWLLVCFPVRADDALYVVVNTTNGIENLSHHEVVDIFMGRDRTFPDGNKVT CHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHEEECCCCCCCCCCEEE VFDNSSDTETRALFYRQLVNRSLAQVSSYWARLQFSARVTQPREIGQRQALLELMNSTPS EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC GITFVKSTELDPALKVVYKFDP CEEEEECCCCCHHHEEEEEECC >Mature Secondary Structure MKRLIISLIAWLLVCFPVRADDALYVVVNTTNGIENLSHHEVVDIFMGRDRTFPDGNKVT CHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHEEECCCCCCCCCCEEE VFDNSSDTETRALFYRQLVNRSLAQVSSYWARLQFSARVTQPREIGQRQALLELMNSTPS EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC GITFVKSTELDPALKVVYKFDP CEEEEECCCCCHHHEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA