| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773696
Identifier: 119773696
GI number: 119773696
Start: 693651
End: 694433
Strand: Direct
Name: 119773696
Synonym: Sama_0558
Alternate gene names: NA
Gene position: 693651-694433 (Clockwise)
Preceding gene: 119773692
Following gene: 119773703
Centisome position: 16.11
GC content: 51.85
Gene sequence:
>783_bases ATGGAACTCCTTATTATCGCGCTGGTTGCCATGCTGACTTCCGGGATGACCTTCTTCTCGGGTTTTGGTTTGGGCACCAT TCTGGTTCCTATGTTCGCTTTATTTTTTCCATTACCCTTGGCCATTGCCGCAGCGGCAGTGGTGCATTTCACAAACAACC TGTTCAAGTTTGCGCTGATGGCCCGGCAAGCAGATTGGAAGGTGGTGGCACGCTTCGGATTACCTGCCGCGTTGGCCGCC ATTCTGGGCGCGAGTTCCCTGGCGCTCTTTGACCGCTTGCCAGCGCTGTTGCATTACTCATTGGCGGGCTTGGTTTTTGA GATTACTGCGGTGAAAGTACTGATAGGCGGTCTGATAGCACTATTTGCAATGCTGGAACTATCACATCGTTTTCAATCAC TGACTTTTTCCCGGCGTTGGCTCTCTCTTGGTGGGTTCCTATCAGGCTTTTTTGGTGGGCTTTCGGGCAATCAGGGAGCA TTACGTTCAGCATTTTTATTGAAAGCAGGCTTGTCCATGGAAGCCTTTGTCGCGACAGGGATTGTTTCGGCGACAATCGT CGATGTTACACGTCTCCTTGTGTATGGCAGTGCGATATCGGTAGGTCAATTCGCTCAAATTGAGACGCTGGCGTTGCCGG TGGCCGTTGGCACTCTTGCAGCCTTGATTGGCAGCCTTCTTGCCAAGCGTCTCCTGGAAAAGGTGACCTTGCCTGGTATT CAGATGTTGGTCGCAATCGCGATGTTGGGTGTAGGTTTCGCACTGATGTTGGGTGTGCTCTAG
Upstream 100 bases:
>100_bases AGGACGCTGTCAGTTCCGGCGGCAGTGCGCATTTTTGAATATTGAAATCTGGTAGATTGGACTGACTATTGGCGGGTGTC GATACTATCAGGAACACATC
Downstream 100 bases:
>100_bases GCCGTTGAGTGTGTCAGCCGGTTGAAATTCCAACCTATTTCCTGACGATTCAGCAGCAAACGCCCACAAAAGAGCCGCAC TGGGTTCAGCAGTGCGGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 260; Mature: 260
Protein sequence:
>260_residues MELLIIALVAMLTSGMTFFSGFGLGTILVPMFALFFPLPLAIAAAAVVHFTNNLFKFALMARQADWKVVARFGLPAALAA ILGASSLALFDRLPALLHYSLAGLVFEITAVKVLIGGLIALFAMLELSHRFQSLTFSRRWLSLGGFLSGFFGGLSGNQGA LRSAFLLKAGLSMEAFVATGIVSATIVDVTRLLVYGSAISVGQFAQIETLALPVAVGTLAALIGSLLAKRLLEKVTLPGI QMLVAIAMLGVGFALMLGVL
Sequences:
>Translated_260_residues MELLIIALVAMLTSGMTFFSGFGLGTILVPMFALFFPLPLAIAAAAVVHFTNNLFKFALMARQADWKVVARFGLPAALAA ILGASSLALFDRLPALLHYSLAGLVFEITAVKVLIGGLIALFAMLELSHRFQSLTFSRRWLSLGGFLSGFFGGLSGNQGA LRSAFLLKAGLSMEAFVATGIVSATIVDVTRLLVYGSAISVGQFAQIETLALPVAVGTLAALIGSLLAKRLLEKVTLPGI QMLVAIAMLGVGFALMLGVL >Mature_260_residues MELLIIALVAMLTSGMTFFSGFGLGTILVPMFALFFPLPLAIAAAAVVHFTNNLFKFALMARQADWKVVARFGLPAALAA ILGASSLALFDRLPALLHYSLAGLVFEITAVKVLIGGLIALFAMLELSHRFQSLTFSRRWLSLGGFLSGFFGGLSGNQGA LRSAFLLKAGLSMEAFVATGIVSATIVDVTRLLVYGSAISVGQFAQIETLALPVAVGTLAALIGSLLAKRLLEKVTLPGI QMLVAIAMLGVGFALMLGVL
Specific function: Unknown
COG id: COG0730
COG function: function code R; Predicted permeases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27263; Mature: 27263
Theoretical pI: Translated: 10.84; Mature: 10.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELLIIALVAMLTSGMTFFSGFGLGTILVPMFALFFPLPLAIAAAAVVHFTNNLFKFALM CHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARQADWKVVARFGLPAALAAILGASSLALFDRLPALLHYSLAGLVFEITAVKVLIGGLIA HHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFAMLELSHRFQSLTFSRRWLSLGGFLSGFFGGLSGNQGALRSAFLLKAGLSMEAFVATG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHH IVSATIVDVTRLLVYGSAISVGQFAQIETLALPVAVGTLAALIGSLLAKRLLEKVTLPGI HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH QMLVAIAMLGVGFALMLGVL HHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MELLIIALVAMLTSGMTFFSGFGLGTILVPMFALFFPLPLAIAAAAVVHFTNNLFKFALM CHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARQADWKVVARFGLPAALAAILGASSLALFDRLPALLHYSLAGLVFEITAVKVLIGGLIA HHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFAMLELSHRFQSLTFSRRWLSLGGFLSGFFGGLSGNQGALRSAFLLKAGLSMEAFVATG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHH IVSATIVDVTRLLVYGSAISVGQFAQIETLALPVAVGTLAALIGSLLAKRLLEKVTLPGI HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH QMLVAIAMLGVGFALMLGVL HHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA