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The map label for this gene is rbsR [H]

Identifier: 119773703

GI number: 119773703

Start: 704038

End: 705057

Strand: Direct

Name: rbsR [H]

Synonym: Sama_0565

Alternate gene names: 119773703

Gene position: 704038-705057 (Clockwise)

Preceding gene: 119773696

Following gene: 119773708

Centisome position: 16.35

GC content: 57.06

Gene sequence:

>1020_bases
ATGCAGGCAAAAACAACCAAGAAAAACGTGACTGTGATTGATGTGGCCAAGGCCGCAGGCGTCTCCAAATCTACCGTGTC
GCTGGTGCTGCAGGGCAGTGACAAGGTTAATCCCGCTACCCGCGACAAGGTGCAGGCGGCCATGGCCGAACTGGGTTATG
TATACAACCGGGAGGCAGCATCGCTCAGAGGCAAGCGCTCCAATCTGGTGGCGATTGTCATCAACGACCTGACCAACCCC
TACTCAGCGCAGCTAGCAGTCGGGCTTGAGGCCAATATCCGTCGTATGGGACTTTTCTCTATGGTGGTTAACTCAGGTGA
AGACAAAGACACCCAAGGCCAGTTGGTGCAGAGTCTCAAAGAATACAACGTGGCTGCCTTTGTGATCTGTCCTGCCCCCG
GTACAGATGCTGACTGGGTGAATCAGCTCGCGGCCACGGTGCCCGTAATCCATATAATGCGTGAGATAACGGGGGCCAAG
GTGCCTACAGTGCTGCCCGATAACCAGGCCGGTACGCTGGCCTCGACCCGCCATTTGCTGAGTCAGGGTTATACCCGCAT
CGGATTTTTCGGCGGTAATCAGCGTATCTCAGATTACGGCGAGCGTTTGGCAGGCTTTAAGGCGGCGCTGGCAGAAGCAG
GGCTTGAGCCTGCAGGAGTGTGGGAGACGGCGCTCACCAATCGCCATGGTGGCCGCCTTGCCATGGCTGAGCTGCTCGCC
TCATCAACGCGGCCTGAGGCGCTGGTGTGCTTTACCGATATTGTGGCCTACGGTGCCATAGAGCAATTAAGACAACAGGG
CCTGATGCCTGGCAAAGACATGGCGATAGTCGGATTTGACGATTTGGAAGACTCCAAGCTGATGACGCCGGCGCTGAGCA
GTATCGCCATTGATGCCGATGCCCTCGGTGCGACGGTATGCCAGGTGTTGGAAGACATCCGCAGCGGTCAGCAGATGCAG
GGATTGCAGCGACTTCCTGTGCAACTGAAAGCCAGAGGTTCCAGTCTGCGCGCGTGTTAG

Upstream 100 bases:

>100_bases
TTGGAACGTTCCAATTTGTGTTAATATAATTAGTGGCTGGTTATAATTCAAACCCTTTTGATGTGCTGGCGACTCTTCAG
ACCAGACTCAGGGAACAGGA

Downstream 100 bases:

>100_bases
CCGGTCACAAGCTTAATCAAAAGGGCGCCAATGGCGCCCTTTTGATTTCTTGCTGACTAGCTTTGCAGGATTTGCAGCGG
CAGACCCAGCAGGCCATCGC

Product: LacI family transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MQAKTTKKNVTVIDVAKAAGVSKSTVSLVLQGSDKVNPATRDKVQAAMAELGYVYNREAASLRGKRSNLVAIVINDLTNP
YSAQLAVGLEANIRRMGLFSMVVNSGEDKDTQGQLVQSLKEYNVAAFVICPAPGTDADWVNQLAATVPVIHIMREITGAK
VPTVLPDNQAGTLASTRHLLSQGYTRIGFFGGNQRISDYGERLAGFKAALAEAGLEPAGVWETALTNRHGGRLAMAELLA
SSTRPEALVCFTDIVAYGAIEQLRQQGLMPGKDMAIVGFDDLEDSKLMTPALSSIAIDADALGATVCQVLEDIRSGQQMQ
GLQRLPVQLKARGSSLRAC

Sequences:

>Translated_339_residues
MQAKTTKKNVTVIDVAKAAGVSKSTVSLVLQGSDKVNPATRDKVQAAMAELGYVYNREAASLRGKRSNLVAIVINDLTNP
YSAQLAVGLEANIRRMGLFSMVVNSGEDKDTQGQLVQSLKEYNVAAFVICPAPGTDADWVNQLAATVPVIHIMREITGAK
VPTVLPDNQAGTLASTRHLLSQGYTRIGFFGGNQRISDYGERLAGFKAALAEAGLEPAGVWETALTNRHGGRLAMAELLA
SSTRPEALVCFTDIVAYGAIEQLRQQGLMPGKDMAIVGFDDLEDSKLMTPALSSIAIDADALGATVCQVLEDIRSGQQMQ
GLQRLPVQLKARGSSLRAC
>Mature_339_residues
MQAKTTKKNVTVIDVAKAAGVSKSTVSLVLQGSDKVNPATRDKVQAAMAELGYVYNREAASLRGKRSNLVAIVINDLTNP
YSAQLAVGLEANIRRMGLFSMVVNSGEDKDTQGQLVQSLKEYNVAAFVICPAPGTDADWVNQLAATVPVIHIMREITGAK
VPTVLPDNQAGTLASTRHLLSQGYTRIGFFGGNQRISDYGERLAGFKAALAEAGLEPAGVWETALTNRHGGRLAMAELLA
SSTRPEALVCFTDIVAYGAIEQLRQQGLMPGKDMAIVGFDDLEDSKLMTPALSSIAIDADALGATVCQVLEDIRSGQQMQ
GLQRLPVQLKARGSSLRAC

Specific function: Transcriptional repressor for the ribose rbsDACBK operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lacI-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789202, Length=287, Percent_Identity=32.0557491289199, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1787906, Length=271, Percent_Identity=34.3173431734317, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1786540, Length=333, Percent_Identity=31.2312312312312, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1790194, Length=331, Percent_Identity=32.02416918429, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1790369, Length=338, Percent_Identity=25.7396449704142, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1788474, Length=288, Percent_Identity=29.5138888888889, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI1787948, Length=329, Percent_Identity=26.7477203647416, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789068, Length=297, Percent_Identity=28.956228956229, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI48994940, Length=306, Percent_Identity=26.1437908496732, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1790715, Length=302, Percent_Identity=24.1721854304636, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1787580, Length=316, Percent_Identity=24.3670886075949, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1789456, Length=355, Percent_Identity=23.6619718309859, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790689, Length=264, Percent_Identity=26.1363636363636, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000843
- InterPro:   IPR010982
- InterPro:   IPR001761 [H]

Pfam domain/function: PF00356 LacI; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36088; Mature: 36088

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: PS00356 HTH_LACI_1 ; PS50932 HTH_LACI_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQAKTTKKNVTVIDVAKAAGVSKSTVSLVLQGSDKVNPATRDKVQAAMAELGYVYNREAA
CCCCCCCCCEEEEEEHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHH
SLRGKRSNLVAIVINDLTNPYSAQLAVGLEANIRRMGLFSMVVNSGEDKDTQGQLVQSLK
HHCCCCCCEEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
EYNVAAFVICPAPGTDADWVNQLAATVPVIHIMREITGAKVPTVLPDNQAGTLASTRHLL
HCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHH
SQGYTRIGFFGGNQRISDYGERLAGFKAALAEAGLEPAGVWETALTNRHGGRLAMAELLA
HCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHH
SSTRPEALVCFTDIVAYGAIEQLRQQGLMPGKDMAIVGFDDLEDSKLMTPALSSIAIDAD
CCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHH
ALGATVCQVLEDIRSGQQMQGLQRLPVQLKARGSSLRAC
HHHHHHHHHHHHHHCCHHHHHHHHCCCEEEECCCCCCCC
>Mature Secondary Structure
MQAKTTKKNVTVIDVAKAAGVSKSTVSLVLQGSDKVNPATRDKVQAAMAELGYVYNREAA
CCCCCCCCCEEEEEEHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCHHH
SLRGKRSNLVAIVINDLTNPYSAQLAVGLEANIRRMGLFSMVVNSGEDKDTQGQLVQSLK
HHCCCCCCEEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
EYNVAAFVICPAPGTDADWVNQLAATVPVIHIMREITGAKVPTVLPDNQAGTLASTRHLL
HCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHH
SQGYTRIGFFGGNQRISDYGERLAGFKAALAEAGLEPAGVWETALTNRHGGRLAMAELLA
HCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHH
SSTRPEALVCFTDIVAYGAIEQLRQQGLMPGKDMAIVGFDDLEDSKLMTPALSSIAIDAD
CCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCHH
ALGATVCQVLEDIRSGQQMQGLQRLPVQLKARGSSLRAC
HHHHHHHHHHHHHHCCHHHHHHHHCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]