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The map label for this gene is ygdL [H]

Identifier: 119773686

GI number: 119773686

Start: 672326

End: 673159

Strand: Direct

Name: ygdL [H]

Synonym: Sama_0546

Alternate gene names: 119773686

Gene position: 672326-673159 (Clockwise)

Preceding gene: 119773683

Following gene: 119773688

Centisome position: 15.61

GC content: 54.44

Gene sequence:

>834_bases
ATGCGGCGTTTTTTACGGCATGGGGATCCACAGGTGGAACAGCAGCTGACACAGTCCTATCTGGACCGATTTGGTGGTAT
TGGCAGACTCTATGGTCAGCAGGCGCTGGTGCGTTTTCAGCAAGCCCATGTGCTGGTAATAGGCATAGGGGGCGTCGGCA
CCTGGGTGGCAGAGTCCCTTGCCCGCAGCGGCATCGGTCATATTAGCCTGATGGATCTGGACGATGTGTGTGTGACCAAT
ACCAATCGCCAAATCCACGCATTGAACGATACCATAGGCCAGTCCAAGGTGGCGGTGATGGCAGAGCGTATCCGCGCTAT
CAACCCTGAATGCCAGATTGACGAGTTGGAAGACTTTATCACCCCCGACAACCTTGCTGAATATCTGGGACCCACATCGG
GTATCGACTATGTGGTGGATTGTATCGATGCAGTGAAACCCAAGGCTGCACTTATTGCTTGGTGCAAACGCAATAAAATT
CGCATCATCACGGTTGGCGGTGCCGGTGGCCAGCTGGATCCCACGAAAATCCAGGTGACAGATCTTTCGCGCACCATTCA
AGACCCCCTGCTTGCCAAGGTGCGCAACATTTTGCGTCGTGAGTACAATTTCTCCCGTAATCTGGATCGCAAGTTTGCCG
TCGAAGCGGTGTTTTCCACTGAGGCGCTGACTTATCCGGGTAAGGATGGCGAGGTGTGTGCCACTAAACCTGCCGAAGGC
GGCAGCATGCGGATGGACTGTGCTTCAGGCTTCGGCGCTGTGACCGTGGTCACCGGCACCTTTGGTTTTATGGCGGTGAG
CCGGGTATTGATGTGGCTTAAGCAAAAAGCCTAG

Upstream 100 bases:

>100_bases
TGTCGCTGACAGTGCTAACATGTCAGGCACACATGGCCTGATTTGTATCAGGCCGCTCAGAAACGTCCTGTGCTTTCGGG
CTGCGGCACTTTAGGCTAGA

Downstream 100 bases:

>100_bases
ATATGGAATTGATACCCGTCTTTGACTGAGTCGCTGGCCTGCAGATCGTCATCCCGTTTTACCGGGATGCTCAGGACAAA
GCAGGCCCCCCCCAGAGTTG

Product: HesA/MoeB/ThiF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MRRFLRHGDPQVEQQLTQSYLDRFGGIGRLYGQQALVRFQQAHVLVIGIGGVGTWVAESLARSGIGHISLMDLDDVCVTN
TNRQIHALNDTIGQSKVAVMAERIRAINPECQIDELEDFITPDNLAEYLGPTSGIDYVVDCIDAVKPKAALIAWCKRNKI
RIITVGGAGGQLDPTKIQVTDLSRTIQDPLLAKVRNILRREYNFSRNLDRKFAVEAVFSTEALTYPGKDGEVCATKPAEG
GSMRMDCASGFGAVTVVTGTFGFMAVSRVLMWLKQKA

Sequences:

>Translated_277_residues
MRRFLRHGDPQVEQQLTQSYLDRFGGIGRLYGQQALVRFQQAHVLVIGIGGVGTWVAESLARSGIGHISLMDLDDVCVTN
TNRQIHALNDTIGQSKVAVMAERIRAINPECQIDELEDFITPDNLAEYLGPTSGIDYVVDCIDAVKPKAALIAWCKRNKI
RIITVGGAGGQLDPTKIQVTDLSRTIQDPLLAKVRNILRREYNFSRNLDRKFAVEAVFSTEALTYPGKDGEVCATKPAEG
GSMRMDCASGFGAVTVVTGTFGFMAVSRVLMWLKQKA
>Mature_277_residues
MRRFLRHGDPQVEQQLTQSYLDRFGGIGRLYGQQALVRFQQAHVLVIGIGGVGTWVAESLARSGIGHISLMDLDDVCVTN
TNRQIHALNDTIGQSKVAVMAERIRAINPECQIDELEDFITPDNLAEYLGPTSGIDYVVDCIDAVKPKAALIAWCKRNKI
RIITVGGAGGQLDPTKIQVTDLSRTIQDPLLAKVRNILRREYNFSRNLDRKFAVEAVFSTEALTYPGKDGEVCATKPAEG
GSMRMDCASGFGAVTVVTGTFGFMAVSRVLMWLKQKA

Specific function: Unknown

COG id: COG1179

COG function: function code H; Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hesA/moeB/thiF family [H]

Homologues:

Organism=Escherichia coli, GI1789177, Length=262, Percent_Identity=59.9236641221374, Blast_Score=337, Evalue=6e-94,
Organism=Escherichia coli, GI87082356, Length=145, Percent_Identity=35.8620689655172, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787048, Length=133, Percent_Identity=31.5789473684211, Blast_Score=73, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6321790, Length=231, Percent_Identity=27.7056277056277, Blast_Score=96, Evalue=7e-21,
Organism=Saccharomyces cerevisiae, GI6322825, Length=143, Percent_Identity=36.3636363636364, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24582879, Length=153, Percent_Identity=31.3725490196078, Blast_Score=74, Evalue=8e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009036
- InterPro:   IPR016040
- InterPro:   IPR000594 [H]

Pfam domain/function: PF00899 ThiF [H]

EC number: NA

Molecular weight: Translated: 30417; Mature: 30417

Theoretical pI: Translated: 8.12; Mature: 8.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRFLRHGDPQVEQQLTQSYLDRFGGIGRLYGQQALVRFQQAHVLVIGIGGVGTWVAESL
CCCCHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
ARSGIGHISLMDLDDVCVTNTNRQIHALNDTIGQSKVAVMAERIRAINPECQIDELEDFI
HHCCCCEEEEEECCCCEEECCCCEEEECCHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHC
TPDNLAEYLGPTSGIDYVVDCIDAVKPKAALIAWCKRNKIRIITVGGAGGQLDPTKIQVT
CHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEE
DLSRTIQDPLLAKVRNILRREYNFSRNLDRKFAVEAVFSTEALTYPGKDGEVCATKPAEG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCCCCCEEECCCCCC
GSMRMDCASGFGAVTVVTGTFGFMAVSRVLMWLKQKA
CCEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRRFLRHGDPQVEQQLTQSYLDRFGGIGRLYGQQALVRFQQAHVLVIGIGGVGTWVAESL
CCCCHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
ARSGIGHISLMDLDDVCVTNTNRQIHALNDTIGQSKVAVMAERIRAINPECQIDELEDFI
HHCCCCEEEEEECCCCEEECCCCEEEECCHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHC
TPDNLAEYLGPTSGIDYVVDCIDAVKPKAALIAWCKRNKIRIITVGGAGGQLDPTKIQVT
CHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEE
DLSRTIQDPLLAKVRNILRREYNFSRNLDRKFAVEAVFSTEALTYPGKDGEVCATKPAEG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCEEECCCCCCCEEECCCCCC
GSMRMDCASGFGAVTVVTGTFGFMAVSRVLMWLKQKA
CCEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]