| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773682
Identifier: 119773682
GI number: 119773682
Start: 668288
End: 668632
Strand: Direct
Name: 119773682
Synonym: Sama_0542
Alternate gene names: NA
Gene position: 668288-668632 (Clockwise)
Preceding gene: 119773680
Following gene: 119773683
Centisome position: 15.52
GC content: 48.7
Gene sequence:
>345_bases ATGAACGCCCAAAAGAAACAACAACTGATTGAACTGTATGACTTTGCACGTAAGCGTATCATTCAGTCAATGGAGCTGAG GCACTGTCCCCATGCCGGGTTTTATAACAGTGTCGATGAGCGCTGCATCTATTGCCATCAGGGGATGGAATGCGTGTGGA TGAATCACAACGACGAATTGGTCTCACTGGAAGAGAAAAGCGAAGAAGACCTTAAGCAGCAACTCTTGGTTGCAGTAGAC TTTGTTGACTCCAATTTGTCGCCCTATCACCTGACCCGGCGCAAGTGTCAGTGTGAAAACTGTGTCTGGTTGCGTCAGGT GAACGAGGCATTGAACGCGCCCTGA
Upstream 100 bases:
>100_bases TTGATGCAAATCAACTCCGGCGCAGACAGCACAGGCTAAGGTGTTTTTATCAATTTATACTTTGCTTAACCGCAGGCTGG CGGCGATTGAGGAGGGCAGG
Downstream 100 bases:
>100_bases AGCGCGCTTTGCATCCCCCAGACTTTGCCGCTAGAGTAAGGCGTCTTTTTTCGTCATAGGGGATGGTCATGGAGCCCGGA TTCTGGCACGACAAGTGGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 114; Mature: 114
Protein sequence:
>114_residues MNAQKKQQLIELYDFARKRIIQSMELRHCPHAGFYNSVDERCIYCHQGMECVWMNHNDELVSLEEKSEEDLKQQLLVAVD FVDSNLSPYHLTRRKCQCENCVWLRQVNEALNAP
Sequences:
>Translated_114_residues MNAQKKQQLIELYDFARKRIIQSMELRHCPHAGFYNSVDERCIYCHQGMECVWMNHNDELVSLEEKSEEDLKQQLLVAVD FVDSNLSPYHLTRRKCQCENCVWLRQVNEALNAP >Mature_114_residues MNAQKKQQLIELYDFARKRIIQSMELRHCPHAGFYNSVDERCIYCHQGMECVWMNHNDELVSLEEKSEEDLKQQLLVAVD FVDSNLSPYHLTRRKCQCENCVWLRQVNEALNAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13516; Mature: 13516
Theoretical pI: Translated: 5.99; Mature: 5.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.1 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 9.6 %Cys+Met (Translated Protein) 6.1 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 9.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAQKKQQLIELYDFARKRIIQSMELRHCPHAGFYNSVDERCIYCHQGMECVWMNHNDEL CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCE VSLEEKSEEDLKQQLLVAVDFVDSNLSPYHLTRRKCQCENCVWLRQVNEALNAP EECHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MNAQKKQQLIELYDFARKRIIQSMELRHCPHAGFYNSVDERCIYCHQGMECVWMNHNDEL CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCE VSLEEKSEEDLKQQLLVAVDFVDSNLSPYHLTRRKCQCENCVWLRQVNEALNAP EECHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA