| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is fxsA [H]
Identifier: 119773680
GI number: 119773680
Start: 665610
End: 666200
Strand: Direct
Name: fxsA [H]
Synonym: Sama_0540
Alternate gene names: 119773680
Gene position: 665610-666200 (Clockwise)
Preceding gene: 119773674
Following gene: 119773682
Centisome position: 15.46
GC content: 56.51
Gene sequence:
>591_bases ATGTTTTTTGCTTTTGTTCTGATCTTTATCCTGATCCCCGTGGTCGAGCTCTCGGTGCTGATTCGGGTTGGCGAAGCGCT CGGCAGCCTGACCACAGTGGCACTGGTGCTCTTCACCGCAGTAGTAGGGGTATCCCTGGTTCGCAGTCAGGGATTGTCGA CCCTGATGCAGGCGCAGCAGAAAATGGCCCGGGGTGAGGCGCCTACGTCTGAATTGGTACAGGGCATGATGCTGGCCATG GCCGGAGTCCTGCTGCTGATACCGGGCTTTGTCACCGACTTTATTGGTTTGCTCCTGCTCACGCCCATTACCCGTAAACC CCTGGCAGCTTTGCTGCTGAAGCGCTTGCAACTGAAAGTGGTGGGTCAGGGTGGCTTTGGTGCCAATTCTCAGGGGCCTT TTGGTCAGGGGCCGTTTGGCCAGGGACCTTTTGGTAACGACCCCTTCAATCGCCAGGGTGGCAACACCTTCGATGGCGAC TTTGAACGCAAAGATGACCCCATGGCGCAAAGTCATCAGCTGAACCAGCCCAAAAATCCGGCCAGTGAAGATGATACTGC GCAGTCTGACACCCACAAGCCCAGAGACTGA
Upstream 100 bases:
>100_bases AGTGATACGGGTTGTTTCTCCCCGCAGCGACAGCCGGTACTCTTGAAATTTGACCGGACAGCCCCCATTTATCTTGCAAC CCACTGTATTCGAGGTCGCC
Downstream 100 bases:
>100_bases ACTGTGCGCTGGGTTTAGTGGCCGCACGCTTCAGCAGCGGGTCTTTTTCCACACTCGATGATTCAGGTTTCGGAATGTAA CTGCCTGGGATCTTTTGGAT
Product: FxsA cytoplasmic membrane protein
Products: NA
Alternate protein names: Suppressor of F exclusion of phage T7 [H]
Number of amino acids: Translated: 196; Mature: 196
Protein sequence:
>196_residues MFFAFVLIFILIPVVELSVLIRVGEALGSLTTVALVLFTAVVGVSLVRSQGLSTLMQAQQKMARGEAPTSELVQGMMLAM AGVLLLIPGFVTDFIGLLLLTPITRKPLAALLLKRLQLKVVGQGGFGANSQGPFGQGPFGQGPFGNDPFNRQGGNTFDGD FERKDDPMAQSHQLNQPKNPASEDDTAQSDTHKPRD
Sequences:
>Translated_196_residues MFFAFVLIFILIPVVELSVLIRVGEALGSLTTVALVLFTAVVGVSLVRSQGLSTLMQAQQKMARGEAPTSELVQGMMLAM AGVLLLIPGFVTDFIGLLLLTPITRKPLAALLLKRLQLKVVGQGGFGANSQGPFGQGPFGQGPFGNDPFNRQGGNTFDGD FERKDDPMAQSHQLNQPKNPASEDDTAQSDTHKPRD >Mature_196_residues MFFAFVLIFILIPVVELSVLIRVGEALGSLTTVALVLFTAVVGVSLVRSQGLSTLMQAQQKMARGEAPTSELVQGMMLAM AGVLLLIPGFVTDFIGLLLLTPITRKPLAALLLKRLQLKVVGQGGFGANSQGPFGQGPFGQGPFGNDPFNRQGGNTFDGD FERKDDPMAQSHQLNQPKNPASEDDTAQSDTHKPRD
Specific function: Overexpression Alleviates The Exclusion Of Phage T7 In Cells Harboring The F Plasmid. [C]
COG id: COG3030
COG function: function code R; Protein affecting phage T7 exclusion by the F plasmid
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0716 (fxsA) family [H]
Homologues:
Organism=Escherichia coli, GI87082376, Length=165, Percent_Identity=41.2121212121212, Blast_Score=88, Evalue=4e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007313 [H]
Pfam domain/function: PF04186 FxsA [H]
EC number: NA
Molecular weight: Translated: 20951; Mature: 20951
Theoretical pI: Translated: 6.53; Mature: 6.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFFAFVLIFILIPVVELSVLIRVGEALGSLTTVALVLFTAVVGVSLVRSQGLSTLMQAQQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KMARGEAPTSELVQGMMLAMAGVLLLIPGFVTDFIGLLLLTPITRKPLAALLLKRLQLKV HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VGQGGFGANSQGPFGQGPFGQGPFGNDPFNRQGGNTFDGDFERKDDPMAQSHQLNQPKNP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC ASEDDTAQSDTHKPRD CCCCCCCCCCCCCCCC >Mature Secondary Structure MFFAFVLIFILIPVVELSVLIRVGEALGSLTTVALVLFTAVVGVSLVRSQGLSTLMQAQQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KMARGEAPTSELVQGMMLAMAGVLLLIPGFVTDFIGLLLLTPITRKPLAALLLKRLQLKV HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH VGQGGFGANSQGPFGQGPFGQGPFGNDPFNRQGGNTFDGDFERKDDPMAQSHQLNQPKNP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC ASEDDTAQSDTHKPRD CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7846149 [H]