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The map label for this gene is cycH [H]

Identifier: 119773388

GI number: 119773388

Start: 270148

End: 271401

Strand: Reverse

Name: cycH [H]

Synonym: Sama_0247

Alternate gene names: 119773388

Gene position: 271401-270148 (Counterclockwise)

Preceding gene: 119773394

Following gene: 119773386

Centisome position: 6.3

GC content: 51.99

Gene sequence:

>1254_bases
ATGACCACATTCTGGATTTTGATTGCATTTGTTGTGCTGATCGGCCTCATGCTGATCTGGGTGCCCCACTTCCGGCAGCA
GCGTCTGTTAGAGGCTGAAGAAGCTGGCGTGCGTAAGCAAACCAACCTTGAACTCTTTAATGAACGTTTGGCGATTCTCG
AAAAAGAACTGGCTGAAGATCTGTTGGATAATCAGGAATTCGAGGCGCTGAAGAAAGAACTCGAAATTAGCCTGCTGCAA
GACATCAAGCAGGGCAGTGACGAGTCACTGGTCAACACAGTTAAACCCAAAGGGTTGCTGTGGCCTGTGGTGATGTCCGT
TACGCTGCTTGGTATTTCCGGCTACATGTATCAGCACCTTGGCCAATATGAGAATGTGGCCAATCCTCCCCGCGCCGCCA
ATCCCCATGAAGGTATGACCGCCGAACAAATTATGTCGCAGCGGGTACAAATGATGGAAATGGCAGTACAGGCTGAACCC
GATAACAGCCAGGCCTGGTTTAATCTGGGTCACGCCTATATTTCTGCGAACCGGTTTGACGAAGCCGTAAACGCTTTCGA
TAAGGTAATGGCACTGGTAGGTACCCATGCCGAGTTGCTGGGCCCTAAAGCCACCGCCCTTTATTACAAGAACAATCAAC
AGATGTCGGCTGAGATACAGGCATTAGTCGACCAGTCTCTGGCACTCGATCCTCAGGATCCATCGACTCTGCTGTTGGTG
GGTATGGATTCTTTCTTTACCGCCAACTACCAAAAGGCTATCGACGCCTGGCAAAGCATATTGTCTACCCAACGCACCGA
TATCGATAGAACAGCACTGATGAACGCCATCGAAACCGCCCGTATGAAGATGGCGGCCGAGTCAGGCGAGATGCCTCAGG
ACAGCGTTCACCAACCTGTTGCCAAGGCAGTGCCAACGGTAACGGTTCAAATTTCGGTATCACCTGAGCTTGCCGCCAAT
GTCAGCGATTCCGACATGCTGTTTATCTTCGCCCGTGCTACCGAAGGCCCGAAAGTGCCACTGGCGGCGACCAAGATCAG
CGCCAAAGCACTGCCTGCCACTATCACTCTGGACGATAGCACCAATATGGGCGGCGATGTGAAGCTCAGCAGCGCCAAGC
AGGTTGAGATCATTGCGGTATTGTCGAAGCACGGCAGCGTTAAGCCTCAATCAGGAGACCTTAAAGGCAGCCTTAATGGG
GTCGATGTGGGTGGCGAGTCTGTGAACCTGGTACTGGATACCTTGGTGCAATAA

Upstream 100 bases:

>100_bases
CTTAAGCTTATATTACTGTTCAATGAATATGCTTATCGTATAATCTGACCCGCAAACCCGGCGGTATCGCCATTCAAGGC
AACCAAGGTAATATAAGATA

Downstream 100 bases:

>100_bases
GCCCCGGGCGACAGGTACTCACCTACAATAAAGCCGGCTATCTGCCGGCTTTTTGTTTGCCTGAGGTCAGTCTTGCTCAA
GGCAAAATTACAAAAAAACG

Product: cytochrome c-type biogenesis protein CcmH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MTTFWILIAFVVLIGLMLIWVPHFRQQRLLEAEEAGVRKQTNLELFNERLAILEKELAEDLLDNQEFEALKKELEISLLQ
DIKQGSDESLVNTVKPKGLLWPVVMSVTLLGISGYMYQHLGQYENVANPPRAANPHEGMTAEQIMSQRVQMMEMAVQAEP
DNSQAWFNLGHAYISANRFDEAVNAFDKVMALVGTHAELLGPKATALYYKNNQQMSAEIQALVDQSLALDPQDPSTLLLV
GMDSFFTANYQKAIDAWQSILSTQRTDIDRTALMNAIETARMKMAAESGEMPQDSVHQPVAKAVPTVTVQISVSPELAAN
VSDSDMLFIFARATEGPKVPLAATKISAKALPATITLDDSTNMGGDVKLSSAKQVEIIAVLSKHGSVKPQSGDLKGSLNG
VDVGGESVNLVLDTLVQ

Sequences:

>Translated_417_residues
MTTFWILIAFVVLIGLMLIWVPHFRQQRLLEAEEAGVRKQTNLELFNERLAILEKELAEDLLDNQEFEALKKELEISLLQ
DIKQGSDESLVNTVKPKGLLWPVVMSVTLLGISGYMYQHLGQYENVANPPRAANPHEGMTAEQIMSQRVQMMEMAVQAEP
DNSQAWFNLGHAYISANRFDEAVNAFDKVMALVGTHAELLGPKATALYYKNNQQMSAEIQALVDQSLALDPQDPSTLLLV
GMDSFFTANYQKAIDAWQSILSTQRTDIDRTALMNAIETARMKMAAESGEMPQDSVHQPVAKAVPTVTVQISVSPELAAN
VSDSDMLFIFARATEGPKVPLAATKISAKALPATITLDDSTNMGGDVKLSSAKQVEIIAVLSKHGSVKPQSGDLKGSLNG
VDVGGESVNLVLDTLVQ
>Mature_416_residues
TTFWILIAFVVLIGLMLIWVPHFRQQRLLEAEEAGVRKQTNLELFNERLAILEKELAEDLLDNQEFEALKKELEISLLQD
IKQGSDESLVNTVKPKGLLWPVVMSVTLLGISGYMYQHLGQYENVANPPRAANPHEGMTAEQIMSQRVQMMEMAVQAEPD
NSQAWFNLGHAYISANRFDEAVNAFDKVMALVGTHAELLGPKATALYYKNNQQMSAEIQALVDQSLALDPQDPSTLLLVG
MDSFFTANYQKAIDAWQSILSTQRTDIDRTALMNAIETARMKMAAESGEMPQDSVHQPVAKAVPTVTVQISVSPELAANV
SDSDMLFIFARATEGPKVPLAATKISAKALPATITLDDSTNMGGDVKLSSAKQVEIIAVLSKHGSVKPQSGDLKGSLNGV
DVGGESVNLVLDTLVQ

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1790513, Length=152, Percent_Identity=32.2368421052632, Blast_Score=103, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45609; Mature: 45478

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTFWILIAFVVLIGLMLIWVPHFRQQRLLEAEEAGVRKQTNLELFNERLAILEKELAED
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LLDNQEFEALKKELEISLLQDIKQGSDESLVNTVKPKGLLWPVVMSVTLLGISGYMYQHL
HHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
GQYENVANPPRAANPHEGMTAEQIMSQRVQMMEMAVQAEPDNSQAWFNLGHAYISANRFD
HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
EAVNAFDKVMALVGTHAELLGPKATALYYKNNQQMSAEIQALVDQSLALDPQDPSTLLLV
HHHHHHHHHHHHHCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
GMDSFFTANYQKAIDAWQSILSTQRTDIDRTALMNAIETARMKMAAESGEMPQDSVHQPV
ECHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCH
AKAVPTVTVQISVSPELAANVSDSDMLFIFARATEGPKVPLAATKISAKALPATITLDDS
HHHCCEEEEEEEECCHHHCCCCCCCEEEEEEECCCCCCCCEEEEEHHHCCCCEEEEECCC
TNMGGDVKLSSAKQVEIIAVLSKHGSVKPQSGDLKGSLNGVDVGGESVNLVLDTLVQ
CCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCC
>Mature Secondary Structure 
TTFWILIAFVVLIGLMLIWVPHFRQQRLLEAEEAGVRKQTNLELFNERLAILEKELAED
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LLDNQEFEALKKELEISLLQDIKQGSDESLVNTVKPKGLLWPVVMSVTLLGISGYMYQHL
HHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
GQYENVANPPRAANPHEGMTAEQIMSQRVQMMEMAVQAEPDNSQAWFNLGHAYISANRFD
HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
EAVNAFDKVMALVGTHAELLGPKATALYYKNNQQMSAEIQALVDQSLALDPQDPSTLLLV
HHHHHHHHHHHHHCCHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEE
GMDSFFTANYQKAIDAWQSILSTQRTDIDRTALMNAIETARMKMAAESGEMPQDSVHQPV
ECHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCH
AKAVPTVTVQISVSPELAANVSDSDMLFIFARATEGPKVPLAATKISAKALPATITLDDS
HHHCCEEEEEEEECCHHHCCCCCCCEEEEEEECCCCCCCCEEEEEHHHCCCCEEEEECCC
TNMGGDVKLSSAKQVEIIAVLSKHGSVKPQSGDLKGSLNGVDVGGESVNLVLDTLVQ
CCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]