| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773303
Identifier: 119773303
GI number: 119773303
Start: 190244
End: 192076
Strand: Reverse
Name: 119773303
Synonym: Sama_0161
Alternate gene names: NA
Gene position: 192076-190244 (Counterclockwise)
Preceding gene: 119773304
Following gene: 119773299
Centisome position: 4.46
GC content: 56.36
Gene sequence:
>1833_bases ATGCCATTCTTCCCCATAAAATCGTCCCTCACCTTACTTTCTTTTGCCTTGCTGAGCGCTGCGCCCGCTTGGTCTGCCCC CGTTGTTGCCAATCAATTCGTTAACGATGCCGTGTTGCCCCCGATTGAAACCTGGCAAGGTGCCAGTGAAGCCCTGATGC TGGCGCGCGACAGTAAATGGGCGACTCCTTTTGAGCAGAGTGGCGGCCTCAAGAGTCCCGACTACGAAGCCACCATGGCC TGGCTCGACAAGTTGGTTAAACGCAGCAAATATCTGTCAAAGGTGAGTCTGGGCAAGAGCCCTCAGGGGCGTGACATCTG GATGATTGTTGCCAGCAAAGAGGGGGCTGATACCCCGGGCAAGCTGGAAAAACAAGGCAAGCCCAGTGTGCTGGTGCAGG CTGGCATCCATTCCGGTGAAATCGACGGTAAAGACGCGGGCATGATGCTGCTGCGGGATATCGAAATGGGGGGCAAGAGT GCCCTGCTGGACAAGGTAAATCTGTTGTTTGTGCCCATCTTCAGTGTGGATGCCCACGAGCGCGCCAGCGAATATAACCG GGTAAACCAGCGCGGCCCCGTCACCATGGGATGGCGCACCAATGCGCGCAACCTTAACCTCAACCGTGACTACGCCAAGG CCGATACCAAAGAGATGCAGTTGATGCTGACCGCCATCAACGACTGGAACCCCAGCCTCTATATCGATGTGCACGTCACC GATGGCATAGACTACCAGTACGATGTGACCTTCGGTTACAACCTGAGCCAGGGATTGAGTCCGGCCGCGTTTGCCTGGCT CGACGGTGAATATCGCCCGGACATAGAATCGGCGTTGACCCGCGCAGGTCATATTCCCGGTCCTCTGGTGTTTGCCCTGG ATAACAGCGATATGACCAGGGGCATGTCGCTGTGGAGTGCATCGCCCCGCTACTCCAATGGCTATGGTGATGCCCGCCAC CTGCCGACCATATTGATAGAAAACCACAGCCTCAAGCCCTTCAAACAGAGGGTACTGGGCACGTACGTGATGCTGGAACA AACCCTGAAGACGGTGGGCGAGCAGGCAACCGCGCTCAAGGCCGCCATCATGGCCGACAGCTTTGCCTTCCCTGAGCAAG TCACCCTGACCTGGAAAGAAGCACTTCAGCCAAAGGGGTGGGACTTCAAAGGCATAGGTTATCGGGTGGAAAAAAGCCCC ATTTCCGGTGCCGATGTGGTGCGCTGGACGGGCGAGCCCGTGCTGTACGAACAGCTGCCGGTTATCGGCAATACAGTGCC CGATATCAGCGTCAGCCGCCCCGAGGCCTATTATGTGTTGCCCCAATGGCAGGAAGTCATAGCCAAGCTGGAAACCCACG GTATCCGCTATGAGCGACTGCAGCAACCACAGCAACTGACACTGGGTCAGTACAGTTTCAGCAACCCCCAATTTGGCGCC AAAGACTATGAAGGCCGCCAGCGGGTCAGTGCCGACGTCAGCCTGAACAAGGTTGAAACCACATTACCTGTTGGCACCAT CAAAATCAGCACAGAGCAGGCACTGGGCGACCTTGCCATTTTGCTGCTGGAACCCCAGTCCCCGGACTCATTGCTGCAAT GGGGCCTGTTCAATCCCATCTTCACCCGCACCGAATACATGGAGCAGTATGCGGTAGAACCCATGGCGGCGCGGATGTTG GCCGAAGATCCTGAGCTGAAAAAGGCTTTTGACGATGCTCTCAAGGATCCGGACTTTGCCGCCGATCCAAACGCCCGCCT GCGTTGGTTCTACGAAAAGAGCCATTATTACGACCAGGAATACCTCAAGTACCCTGTTTATCGCAGCTTCTGA
Upstream 100 bases:
>100_bases CTGTTTATTCACGCAAAAACGGTTGTAATGCCTCTTGCTAAGACCAGCCAATTACGAAAAGATAGGCCTTTGATTTTTAC TGCCATCATAGGCCTGGTCC
Downstream 100 bases:
>100_bases CGTCAAAAAGCCGGGCTTGCCCGGCTTTTTAGTTTTCTGAATCATCACAGCTATCCCGGATGCCCCTGCCTGAGCTCGAT TGGCGTTAGGATAAGGTCGT
Product: carboxypeptidase
Products: NA
Alternate protein names: Carboxypeptidase; M14 Family Peptidase; Zinc Carboxypeptidase Family Protein; Zinc-Carboxypeptidase; Peptidase Family M; Zinc Carboxypeptidase; Zinc Carboxypeptidase Family; Secreted Protein
Number of amino acids: Translated: 610; Mature: 609
Protein sequence:
>610_residues MPFFPIKSSLTLLSFALLSAAPAWSAPVVANQFVNDAVLPPIETWQGASEALMLARDSKWATPFEQSGGLKSPDYEATMA WLDKLVKRSKYLSKVSLGKSPQGRDIWMIVASKEGADTPGKLEKQGKPSVLVQAGIHSGEIDGKDAGMMLLRDIEMGGKS ALLDKVNLLFVPIFSVDAHERASEYNRVNQRGPVTMGWRTNARNLNLNRDYAKADTKEMQLMLTAINDWNPSLYIDVHVT DGIDYQYDVTFGYNLSQGLSPAAFAWLDGEYRPDIESALTRAGHIPGPLVFALDNSDMTRGMSLWSASPRYSNGYGDARH LPTILIENHSLKPFKQRVLGTYVMLEQTLKTVGEQATALKAAIMADSFAFPEQVTLTWKEALQPKGWDFKGIGYRVEKSP ISGADVVRWTGEPVLYEQLPVIGNTVPDISVSRPEAYYVLPQWQEVIAKLETHGIRYERLQQPQQLTLGQYSFSNPQFGA KDYEGRQRVSADVSLNKVETTLPVGTIKISTEQALGDLAILLLEPQSPDSLLQWGLFNPIFTRTEYMEQYAVEPMAARML AEDPELKKAFDDALKDPDFAADPNARLRWFYEKSHYYDQEYLKYPVYRSF
Sequences:
>Translated_610_residues MPFFPIKSSLTLLSFALLSAAPAWSAPVVANQFVNDAVLPPIETWQGASEALMLARDSKWATPFEQSGGLKSPDYEATMA WLDKLVKRSKYLSKVSLGKSPQGRDIWMIVASKEGADTPGKLEKQGKPSVLVQAGIHSGEIDGKDAGMMLLRDIEMGGKS ALLDKVNLLFVPIFSVDAHERASEYNRVNQRGPVTMGWRTNARNLNLNRDYAKADTKEMQLMLTAINDWNPSLYIDVHVT DGIDYQYDVTFGYNLSQGLSPAAFAWLDGEYRPDIESALTRAGHIPGPLVFALDNSDMTRGMSLWSASPRYSNGYGDARH LPTILIENHSLKPFKQRVLGTYVMLEQTLKTVGEQATALKAAIMADSFAFPEQVTLTWKEALQPKGWDFKGIGYRVEKSP ISGADVVRWTGEPVLYEQLPVIGNTVPDISVSRPEAYYVLPQWQEVIAKLETHGIRYERLQQPQQLTLGQYSFSNPQFGA KDYEGRQRVSADVSLNKVETTLPVGTIKISTEQALGDLAILLLEPQSPDSLLQWGLFNPIFTRTEYMEQYAVEPMAARML AEDPELKKAFDDALKDPDFAADPNARLRWFYEKSHYYDQEYLKYPVYRSF >Mature_609_residues PFFPIKSSLTLLSFALLSAAPAWSAPVVANQFVNDAVLPPIETWQGASEALMLARDSKWATPFEQSGGLKSPDYEATMAW LDKLVKRSKYLSKVSLGKSPQGRDIWMIVASKEGADTPGKLEKQGKPSVLVQAGIHSGEIDGKDAGMMLLRDIEMGGKSA LLDKVNLLFVPIFSVDAHERASEYNRVNQRGPVTMGWRTNARNLNLNRDYAKADTKEMQLMLTAINDWNPSLYIDVHVTD GIDYQYDVTFGYNLSQGLSPAAFAWLDGEYRPDIESALTRAGHIPGPLVFALDNSDMTRGMSLWSASPRYSNGYGDARHL PTILIENHSLKPFKQRVLGTYVMLEQTLKTVGEQATALKAAIMADSFAFPEQVTLTWKEALQPKGWDFKGIGYRVEKSPI SGADVVRWTGEPVLYEQLPVIGNTVPDISVSRPEAYYVLPQWQEVIAKLETHGIRYERLQQPQQLTLGQYSFSNPQFGAK DYEGRQRVSADVSLNKVETTLPVGTIKISTEQALGDLAILLLEPQSPDSLLQWGLFNPIFTRTEYMEQYAVEPMAARMLA EDPELKKAFDDALKDPDFAADPNARLRWFYEKSHYYDQEYLKYPVYRSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68367; Mature: 68236
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPFFPIKSSLTLLSFALLSAAPAWSAPVVANQFVNDAVLPPIETWQGASEALMLARDSKW CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCEEEEECCCCC ATPFEQSGGLKSPDYEATMAWLDKLVKRSKYLSKVSLGKSPQGRDIWMIVASKEGADTPG CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC KLEKQGKPSVLVQAGIHSGEIDGKDAGMMLLRDIEMGGKSALLDKVNLLFVPIFSVDAHE CCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHCCEEEEEEEEECCCHH RASEYNRVNQRGPVTMGWRTNARNLNLNRDYAKADTKEMQLMLTAINDWNPSLYIDVHVT HHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHCCHHHEEEEEEEECCCCCEEEEEEEEE DGIDYQYDVTFGYNLSQGLSPAAFAWLDGEYRPDIESALTRAGHIPGPLVFALDNSDMTR CCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCEEEEECCCCCHH GMSLWSASPRYSNGYGDARHLPTILIENHSLKPFKQRVLGTYVMLEQTLKTVGEQATALK CHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAIMADSFAFPEQVTLTWKEALQPKGWDFKGIGYRVEKSPISGADVVRWTGEPVLYEQLP HHHHHHCCCCCCCEEEEHHHHCCCCCCCCCCCCEEEECCCCCCCCEEEECCCEEEHHCCC VIGNTVPDISVSRPEAYYVLPQWQEVIAKLETHGIRYERLQQPQQLTLGQYSFSNPQFGA CCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCHHHHCCCHHCCCCCEECCCCCCCC KDYEGRQRVSADVSLNKVETTLPVGTIKISTEQALGDLAILLLEPQSPDSLLQWGLFNPI CCCCCCHHEECCCEEEEEEEECCEEEEEEEHHHCCCCEEEEEECCCCCHHHHHHCCCCHH FTRTEYMEQYAVEPMAARMLAEDPELKKAFDDALKDPDFAADPNARLRWFYEKSHYYDQE HHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHH YLKYPVYRSF HHCCCCCCCC >Mature Secondary Structure PFFPIKSSLTLLSFALLSAAPAWSAPVVANQFVNDAVLPPIETWQGASEALMLARDSKW CCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCHHHHCCCCCEEEEECCCCC ATPFEQSGGLKSPDYEATMAWLDKLVKRSKYLSKVSLGKSPQGRDIWMIVASKEGADTPG CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC KLEKQGKPSVLVQAGIHSGEIDGKDAGMMLLRDIEMGGKSALLDKVNLLFVPIFSVDAHE CCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHCCEEEEEEEEECCCHH RASEYNRVNQRGPVTMGWRTNARNLNLNRDYAKADTKEMQLMLTAINDWNPSLYIDVHVT HHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHCCHHHEEEEEEEECCCCCEEEEEEEEE DGIDYQYDVTFGYNLSQGLSPAAFAWLDGEYRPDIESALTRAGHIPGPLVFALDNSDMTR CCCCEEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCCCEEEEECCCCCHH GMSLWSASPRYSNGYGDARHLPTILIENHSLKPFKQRVLGTYVMLEQTLKTVGEQATALK CHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAIMADSFAFPEQVTLTWKEALQPKGWDFKGIGYRVEKSPISGADVVRWTGEPVLYEQLP HHHHHHCCCCCCCEEEEHHHHCCCCCCCCCCCCEEEECCCCCCCCEEEECCCEEEHHCCC VIGNTVPDISVSRPEAYYVLPQWQEVIAKLETHGIRYERLQQPQQLTLGQYSFSNPQFGA CCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCHHHHCCCHHCCCCCEECCCCCCCC KDYEGRQRVSADVSLNKVETTLPVGTIKISTEQALGDLAILLLEPQSPDSLLQWGLFNPI CCCCCCHHEECCCEEEEEEEECCEEEEEEEHHHCCCCEEEEEECCCCCHHHHHHCCCCHH FTRTEYMEQYAVEPMAARMLAEDPELKKAFDDALKDPDFAADPNARLRWFYEKSHYYDQE HHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHH YLKYPVYRSF HHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA