| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773299
Identifier: 119773299
GI number: 119773299
Start: 185703
End: 186641
Strand: Reverse
Name: 119773299
Synonym: Sama_0157
Alternate gene names: NA
Gene position: 186641-185703 (Counterclockwise)
Preceding gene: 119773303
Following gene: 119773285
Centisome position: 4.33
GC content: 55.91
Gene sequence:
>939_bases ATGAATACCCGATACCTAACTGCCGCAATACTGCTGGGACTGATGACAGCAAGCCCGCTGGTGACGGCCGGAATCGACGC GCCGCAAACCAGTCATGCCAGTCAGGCTGCATTGCTGGGTAAGCCCGTGAGTCTGGCCCTGATGGAAGAGAGCCTCGCCA AAACCGGTCCCCTGAACTTCAGCGCCCATGCCAGCGCCAATTGGCAGGTGCCTCTGAGGGGCTTGCTCAATCTTGAGGCT CCGGCCGCCAGGGCGGCCGGAAAAAAAGATGCTGATGAGCCTATTCAGGTCTATCTGTATGAGTTTACGCACCCGCTGCA TGGCCGCTTTTTTATCGATACCGGGGTGGCGCGGGGCTTACTTGAGTCGCCCGCAAAACATGGCGTACAAGCTGAACTCT TCCAGACATTTGGCCTCGGGAAAATCCAACTGTTGCAAAGCAGCGGTGAAATTGCATCAAGCGGCAAGCCCCTGAGCGGT ATCTTTCTGACCCACCTGCATCTGGATCATATCAGCGGCCTGCCCGATCTGGCCGCCGATATTCCCCTCTATGTTGGTCG CAACGAACATGTGAGCCTGAACCCTCAGAATCACATGACCCAGGCAGCAACAGATGCCCTCTTGTCTGGCAGGCCGCCAT TGAATGAATGGGGTTTCGATAAAGGCGAAGCGATAGATGTATTTGGTGACGCCAGCGTATTCGCATTGCCCACCCCGGGG CATACCGAAGGCAGCACTGCCTATGTGCTCAATACCCTTAATGGGCCGGTGTTGATTGTTGGCGATACCTGCCATACGAC CTGGGGATGGCAGCAGGGGGTTGAACCCGGTGATTTCACCCGGGATCAGCGACAAAACCGCACTAGTCTGTTGACGTTAA AGGCCCTGAGTGACAGACACAGGCAGTTGAAGGTGTACTTGGGTCATCAACAGCTGTAA
Upstream 100 bases:
>100_bases AACGAATACCTACATACGATATTCGCCAATTGAGACGACTGTCCATCCATGAAAACATGACCACAAGATAAAAGTAGCCA AAACACCGCAAGGATGGAAT
Downstream 100 bases:
>100_bases TTACGGTTGGCGATGCGCGCCAATGTTCACCGCAAAAAAGCAGACCCGGAAATCCCGGGTCTGCTTTATGTCACTGACAG GGTTCAGCCCTTGGGCCAGC
Product: metallo-beta-lactamase family protein
Products: NA
Alternate protein names: Zn-Dependent Hydrolase Lipoprotein; Metallo-Hydrolase; Zn-Dependent Hydrolases Including Glyoxylases; Zn-Dependent Hydrolase; Beta-Lactamase Domain Protein; Beta-Lactamase Domain-Containing Protein
Number of amino acids: Translated: 312; Mature: 312
Protein sequence:
>312_residues MNTRYLTAAILLGLMTASPLVTAGIDAPQTSHASQAALLGKPVSLALMEESLAKTGPLNFSAHASANWQVPLRGLLNLEA PAARAAGKKDADEPIQVYLYEFTHPLHGRFFIDTGVARGLLESPAKHGVQAELFQTFGLGKIQLLQSSGEIASSGKPLSG IFLTHLHLDHISGLPDLAADIPLYVGRNEHVSLNPQNHMTQAATDALLSGRPPLNEWGFDKGEAIDVFGDASVFALPTPG HTEGSTAYVLNTLNGPVLIVGDTCHTTWGWQQGVEPGDFTRDQRQNRTSLLTLKALSDRHRQLKVYLGHQQL
Sequences:
>Translated_312_residues MNTRYLTAAILLGLMTASPLVTAGIDAPQTSHASQAALLGKPVSLALMEESLAKTGPLNFSAHASANWQVPLRGLLNLEA PAARAAGKKDADEPIQVYLYEFTHPLHGRFFIDTGVARGLLESPAKHGVQAELFQTFGLGKIQLLQSSGEIASSGKPLSG IFLTHLHLDHISGLPDLAADIPLYVGRNEHVSLNPQNHMTQAATDALLSGRPPLNEWGFDKGEAIDVFGDASVFALPTPG HTEGSTAYVLNTLNGPVLIVGDTCHTTWGWQQGVEPGDFTRDQRQNRTSLLTLKALSDRHRQLKVYLGHQQL >Mature_312_residues MNTRYLTAAILLGLMTASPLVTAGIDAPQTSHASQAALLGKPVSLALMEESLAKTGPLNFSAHASANWQVPLRGLLNLEA PAARAAGKKDADEPIQVYLYEFTHPLHGRFFIDTGVARGLLESPAKHGVQAELFQTFGLGKIQLLQSSGEIASSGKPLSG IFLTHLHLDHISGLPDLAADIPLYVGRNEHVSLNPQNHMTQAATDALLSGRPPLNEWGFDKGEAIDVFGDASVFALPTPG HTEGSTAYVLNTLNGPVLIVGDTCHTTWGWQQGVEPGDFTRDQRQNRTSLLTLKALSDRHRQLKVYLGHQQL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33538; Mature: 33538
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTRYLTAAILLGLMTASPLVTAGIDAPQTSHASQAALLGKPVSLALMEESLAKTGPLNF CCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCE SAHASANWQVPLRGLLNLEAPAARAAGKKDADEPIQVYLYEFTHPLHGRFFIDTGVARGL EECCCCCCCCCHHHEECCCCCHHHHCCCCCCCCCEEEEEEEECCCCCCEEEEECHHHHHH LESPAKHGVQAELFQTFGLGKIQLLQSSGEIASSGKPLSGIFLTHLHLDHISGLPDLAAD HHHHHHCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHC IPLYVGRNEHVSLNPQNHMTQAATDALLSGRPPLNEWGFDKGEAIDVFGDASVFALPTPG CCEEECCCCEEEECCHHHHHHHHHHHHHCCCCCCHHCCCCCCCEEEEECCCEEEEECCCC HTEGSTAYVLNTLNGPVLIVGDTCHTTWGWQQGVEPGDFTRDQRQNRTSLLTLKALSDRH CCCCCEEEEEEECCCCEEEECCCCCCCCCHHHCCCCCCCCHHHHCCCHHEEEEHHHHCCC RQLKVYLGHQQL EEEEEEECCCCC >Mature Secondary Structure MNTRYLTAAILLGLMTASPLVTAGIDAPQTSHASQAALLGKPVSLALMEESLAKTGPLNF CCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCCCE SAHASANWQVPLRGLLNLEAPAARAAGKKDADEPIQVYLYEFTHPLHGRFFIDTGVARGL EECCCCCCCCCHHHEECCCCCHHHHCCCCCCCCCEEEEEEEECCCCCCEEEEECHHHHHH LESPAKHGVQAELFQTFGLGKIQLLQSSGEIASSGKPLSGIFLTHLHLDHISGLPDLAAD HHHHHHCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHC IPLYVGRNEHVSLNPQNHMTQAATDALLSGRPPLNEWGFDKGEAIDVFGDASVFALPTPG CCEEECCCCEEEECCHHHHHHHHHHHHHCCCCCCHHCCCCCCCEEEEECCCEEEEECCCC HTEGSTAYVLNTLNGPVLIVGDTCHTTWGWQQGVEPGDFTRDQRQNRTSLLTLKALSDRH CCCCCEEEEEEECCCCEEEECCCCCCCCCHHHCCCCCCCCHHHHCCCHHEEEEHHHHCCC RQLKVYLGHQQL EEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA