Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119773258

Identifier: 119773258

GI number: 119773258

Start: 130181

End: 131071

Strand: Reverse

Name: 119773258

Synonym: Sama_0116

Alternate gene names: NA

Gene position: 131071-130181 (Counterclockwise)

Preceding gene: 119773259

Following gene: 119773251

Centisome position: 3.04

GC content: 57.69

Gene sequence:

>891_bases
TTGAGCTTTGAATACCTGGCGTTACTCGCCGCCGCCTGCTGGGCCGTTGGCAGCCTGATGTCGGCCACCGCCGCCACACA
CCTTGGCGCCTTTGCCTTCACCCGCATCAGAATGCTCAGTGCCAGCGTTATGCTCTGGCTGCTGGCGCTGTTCGTTGGCA
GCTGGCACAGCCTGACGTTGGACAGTCTTTATTTGTTGGCGCTCTCAGGGCTTATAGGGATTTTCATTGGCGATACGGCG
CTGTTTGCTGCCATGAATCGCCTGGGGCCCAGAAGGGCCGGGGTACTCTTTGCCACCCACTCACTGTTTTCGGCTGTGCT
GGCCTATCTGTTTCTCGGAGAAACCCTGTGGGGCTGGACCCTGTTTGGCAGTAGCCTGCTCATCAGCGGCGTGATGGTGG
CCATCTTTTTCGGGAAGCGGAAAAACGAAGAACATGCCTGGGAAAACGGTAATCTGCAGGTCAAACGAGGCATGGCACTG
GCACTCTTGTCAGCCCTGTGCCAAGCGGTATCCACCCTGATGCTCAAACCCCTGATGGAAACCGATATAGATGCAGTGGC
GGCTTCGGCAGTGCGCATGAGCACAGCCTTTGTGCTGCATTTCGCGCTTTTGCTACTGGGCTTTTCCGTTGCTAAGGCCA
AAACTCCCGCTACCCCCAAGGTGTTGGCACTCACCATTGGCAACGCTGCACTGTCAATGGTACTGGGCATGACACTGATA
TTGCAGGCACTGAAACACGGCAATGCGGGCCTGGTGGCGATTTTGTCGTCGGTAAGCCCCATTCTGGTGTTACCGCTGCT
ATGGCTGGTGTATCGCAAAAGCCCTGCGGCGGGCGCCTGGCTCGGCGCCATCATGACGGTGGCCGGCACTGTACTGATAC
TGGCCCATTAG

Upstream 100 bases:

>100_bases
AACTGTGTAGTGACAGAATGCCAGTTACCGAACGCTGGAGCATTAATAGCCAAGTCTCTATAATGGCGCCCCCGAATCCC
ACTGACTCACAGGCGAATCC

Downstream 100 bases:

>100_bases
GCTCTCCTTTACAGGACAGTAGCCACACCATCAAAGCCCCTGGTCGGGGCTTTTTCATTTGGTGTCTCAGTTGAACTCGA
AGTTCACCTGTACCGGATAG

Product: hypothetical protein

Products: NA

Alternate protein names: Drug/Metabolite Exporter Family Protein; DMT Family Permease; Permease DMT Superfamily; Conserved Domain Protein; Transporter Drug/Metabolite Exporter Family; Integral Membrane Protein; Permeases Of Drug/Metabolite Transporter; Integral Membrane

Number of amino acids: Translated: 296; Mature: 295

Protein sequence:

>296_residues
MSFEYLALLAAACWAVGSLMSATAATHLGAFAFTRIRMLSASVMLWLLALFVGSWHSLTLDSLYLLALSGLIGIFIGDTA
LFAAMNRLGPRRAGVLFATHSLFSAVLAYLFLGETLWGWTLFGSSLLISGVMVAIFFGKRKNEEHAWENGNLQVKRGMAL
ALLSALCQAVSTLMLKPLMETDIDAVAASAVRMSTAFVLHFALLLLGFSVAKAKTPATPKVLALTIGNAALSMVLGMTLI
LQALKHGNAGLVAILSSVSPILVLPLLWLVYRKSPAAGAWLGAIMTVAGTVLILAH

Sequences:

>Translated_296_residues
MSFEYLALLAAACWAVGSLMSATAATHLGAFAFTRIRMLSASVMLWLLALFVGSWHSLTLDSLYLLALSGLIGIFIGDTA
LFAAMNRLGPRRAGVLFATHSLFSAVLAYLFLGETLWGWTLFGSSLLISGVMVAIFFGKRKNEEHAWENGNLQVKRGMAL
ALLSALCQAVSTLMLKPLMETDIDAVAASAVRMSTAFVLHFALLLLGFSVAKAKTPATPKVLALTIGNAALSMVLGMTLI
LQALKHGNAGLVAILSSVSPILVLPLLWLVYRKSPAAGAWLGAIMTVAGTVLILAH
>Mature_295_residues
SFEYLALLAAACWAVGSLMSATAATHLGAFAFTRIRMLSASVMLWLLALFVGSWHSLTLDSLYLLALSGLIGIFIGDTAL
FAAMNRLGPRRAGVLFATHSLFSAVLAYLFLGETLWGWTLFGSSLLISGVMVAIFFGKRKNEEHAWENGNLQVKRGMALA
LLSALCQAVSTLMLKPLMETDIDAVAASAVRMSTAFVLHFALLLLGFSVAKAKTPATPKVLALTIGNAALSMVLGMTLIL
QALKHGNAGLVAILSSVSPILVLPLLWLVYRKSPAAGAWLGAIMTVAGTVLILAH

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31361; Mature: 31230

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS00257 BOMBESIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFEYLALLAAACWAVGSLMSATAATHLGAFAFTRIRMLSASVMLWLLALFVGSWHSLTL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
DSLYLLALSGLIGIFIGDTALFAAMNRLGPRRAGVLFATHSLFSAVLAYLFLGETLWGWT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFGSSLLISGVMVAIFFGKRKNEEHAWENGNLQVKRGMALALLSALCQAVSTLMLKPLME
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
TDIDAVAASAVRMSTAFVLHFALLLLGFSVAKAKTPATPKVLALTIGNAALSMVLGMTLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHH
LQALKHGNAGLVAILSSVSPILVLPLLWLVYRKSPAAGAWLGAIMTVAGTVLILAH
HHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure 
SFEYLALLAAACWAVGSLMSATAATHLGAFAFTRIRMLSASVMLWLLALFVGSWHSLTL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
DSLYLLALSGLIGIFIGDTALFAAMNRLGPRRAGVLFATHSLFSAVLAYLFLGETLWGWT
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFGSSLLISGVMVAIFFGKRKNEEHAWENGNLQVKRGMALALLSALCQAVSTLMLKPLME
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
TDIDAVAASAVRMSTAFVLHFALLLLGFSVAKAKTPATPKVLALTIGNAALSMVLGMTLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHH
LQALKHGNAGLVAILSSVSPILVLPLLWLVYRKSPAAGAWLGAIMTVAGTVLILAH
HHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA