| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119773245
Identifier: 119773245
GI number: 119773245
Start: 116150
End: 117250
Strand: Direct
Name: 119773245
Synonym: Sama_0103
Alternate gene names: NA
Gene position: 116150-117250 (Clockwise)
Preceding gene: 119773244
Following gene: 119773246
Centisome position: 2.7
GC content: 55.68
Gene sequence:
>1101_bases ATGACTCAATCAATGGCCCCAAACTCCGTGGTCACGCAATCTATGGCTCCAAAATTTTTGTTTATCCCCGTCTCTTCTGC TGAAGGCATGGGGGAGTACATGCGCTCGCTGATAGTGGCAGATGAAGTGAAGCGCTGCTGGCCAGCTGCCGAGGTGTGTT TCATTCTCAGCAAGGAAGCACCTTACGCAGCCAGCTGCCCATATCCAGCCAAACTGCTGGACCGCACACCCACCAAAGAA GTGAAGGCCGTGAATGACATCATGGAGACATTTCGCCCCGATGTGGTGCTCTTTGATGCGTCCGGCCGCAAGTCTCAGCT GGCACGGGCCCATGCCCTGGGCGCCAAAGTTGTGTTTTTCAGCCAGCACAGGCGCAAGCGCAGCCGTGGTATGAAAATAG GCCGTGCCCGGGTGACGGATGCCCATCTGGTCGTACAGCCGGAATTTGTGATTGGTCCCGTTTCCGCTTTCGATGCTTTT AAGTTGAAATTGATTGGTAAGCCGCTGCCTGAGTGTATTGGGCCTGTGTTCAGCGCGCCGGATAAGGCAAGACAGCAGCA ACTGCTCGCCCAATATGGTCTGGTCGACGGGGAGTTTGTGCTCTTTAACGCCGGCTCAGGTGGGCATAAGTTGGCCGGAG GCCTCGCAGCAGACCGTTTTTTTGAGGCAGCACAAGCCAGCTATGTCGCCAGTGGGCTCAAATCCGTCATGGTGTTTGGT CCCAATTATCCCAAGGCATTACCCGAGGCATCGGGAGTGATTTGTCTGAGCGCCCTGGCCAATAGTGACTTTATTAACTT GCTGGTGGCTGCCAAAGCGGCGGTGCTGAGCGGTGGTGATACCTTGCTGCAGGCTATCGCCTTGAAAAAGCTGGTACTGA CGGCTCCGGTTTCCAAAGACCAGCCGCCGCGTATCGCTGTTTGTGCCGACAGAGGGCTGGTGCTGGCCTGTGAGCCAGAG CAGCTTGCCGCCAACATTCCTGCTCTGTTTTCCGATGAAACCACAGGGCCACTGCAGCAGGCACTGGCAGCCGAAGCCGA TATGGACGGCCTGCAACTGACCATGAATAAAATTAAGCATTTGCTGGAGGTTCAGCCATGA
Upstream 100 bases:
>100_bases CGGGCCAAGGGCGACACTCTGATGGAAAAAATTGAAGTTGCTGACGTTTGTCGCATGTTCGACAGGGCCACGGACGTCGC CACCCAGGAGGTGTAAGGTT
Downstream 100 bases:
>100_bases CAGGACGCAGAATTGCCATTGCCATCGACAGTTTGGCCGGTGGCGGCGCAGAAAAGGTGATGTTGACCCTGGCGTCCACC CTGGTGGAGCTGGGCCATGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 366; Mature: 365
Protein sequence:
>366_residues MTQSMAPNSVVTQSMAPKFLFIPVSSAEGMGEYMRSLIVADEVKRCWPAAEVCFILSKEAPYAASCPYPAKLLDRTPTKE VKAVNDIMETFRPDVVLFDASGRKSQLARAHALGAKVVFFSQHRRKRSRGMKIGRARVTDAHLVVQPEFVIGPVSAFDAF KLKLIGKPLPECIGPVFSAPDKARQQQLLAQYGLVDGEFVLFNAGSGGHKLAGGLAADRFFEAAQASYVASGLKSVMVFG PNYPKALPEASGVICLSALANSDFINLLVAAKAAVLSGGDTLLQAIALKKLVLTAPVSKDQPPRIAVCADRGLVLACEPE QLAANIPALFSDETTGPLQQALAAEADMDGLQLTMNKIKHLLEVQP
Sequences:
>Translated_366_residues MTQSMAPNSVVTQSMAPKFLFIPVSSAEGMGEYMRSLIVADEVKRCWPAAEVCFILSKEAPYAASCPYPAKLLDRTPTKE VKAVNDIMETFRPDVVLFDASGRKSQLARAHALGAKVVFFSQHRRKRSRGMKIGRARVTDAHLVVQPEFVIGPVSAFDAF KLKLIGKPLPECIGPVFSAPDKARQQQLLAQYGLVDGEFVLFNAGSGGHKLAGGLAADRFFEAAQASYVASGLKSVMVFG PNYPKALPEASGVICLSALANSDFINLLVAAKAAVLSGGDTLLQAIALKKLVLTAPVSKDQPPRIAVCADRGLVLACEPE QLAANIPALFSDETTGPLQQALAAEADMDGLQLTMNKIKHLLEVQP >Mature_365_residues TQSMAPNSVVTQSMAPKFLFIPVSSAEGMGEYMRSLIVADEVKRCWPAAEVCFILSKEAPYAASCPYPAKLLDRTPTKEV KAVNDIMETFRPDVVLFDASGRKSQLARAHALGAKVVFFSQHRRKRSRGMKIGRARVTDAHLVVQPEFVIGPVSAFDAFK LKLIGKPLPECIGPVFSAPDKARQQQLLAQYGLVDGEFVLFNAGSGGHKLAGGLAADRFFEAAQASYVASGLKSVMVFGP NYPKALPEASGVICLSALANSDFINLLVAAKAAVLSGGDTLLQAIALKKLVLTAPVSKDQPPRIAVCADRGLVLACEPEQ LAANIPALFSDETTGPLQQALAAEADMDGLQLTMNKIKHLLEVQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39121; Mature: 38990
Theoretical pI: Translated: 8.66; Mature: 8.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQSMAPNSVVTQSMAPKFLFIPVSSAEGMGEYMRSLIVADEVKRCWPAAEVCFILSKEA CCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCC PYAASCPYPAKLLDRTPTKEVKAVNDIMETFRPDVVLFDASGRKSQLARAHALGAKVVFF CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEEH SQHRRKRSRGMKIGRARVTDAHLVVQPEFVIGPVSAFDAFKLKLIGKPLPECIGPVFSAP HHHHHHHHCCCEECCEEECCCEEEEECCCEEECCHHHHHHEEEECCCCCHHHHHHHHCCC DKARQQQLLAQYGLVDGEFVLFNAGSGGHKLAGGLAADRFFEAAQASYVASGLKSVMVFG HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHEEEEC PNYPKALPEASGVICLSALANSDFINLLVAAKAAVLSGGDTLLQAIALKKLVLTAPVSKD CCCCCCCCCCCCEEEEEHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC QPPRIAVCADRGLVLACEPEQLAANIPALFSDETTGPLQQALAAEADMDGLQLTMNKIKH CCCEEEEEECCCEEEEECHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH LLEVQP HHCCCC >Mature Secondary Structure TQSMAPNSVVTQSMAPKFLFIPVSSAEGMGEYMRSLIVADEVKRCWPAAEVCFILSKEA CCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHEEEECCC PYAASCPYPAKLLDRTPTKEVKAVNDIMETFRPDVVLFDASGRKSQLARAHALGAKVVFF CCCCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEEH SQHRRKRSRGMKIGRARVTDAHLVVQPEFVIGPVSAFDAFKLKLIGKPLPECIGPVFSAP HHHHHHHHCCCEECCEEECCCEEEEECCCEEECCHHHHHHEEEECCCCCHHHHHHHHCCC DKARQQQLLAQYGLVDGEFVLFNAGSGGHKLAGGLAADRFFEAAQASYVASGLKSVMVFG HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHEEEEC PNYPKALPEASGVICLSALANSDFINLLVAAKAAVLSGGDTLLQAIALKKLVLTAPVSKD CCCCCCCCCCCCEEEEEHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCC QPPRIAVCADRGLVLACEPEQLAANIPALFSDETTGPLQQALAAEADMDGLQLTMNKIKH CCCEEEEEECCCEEEEECHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH LLEVQP HHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA