Definition Nocardioides sp. JS614 chromosome, complete genome.
Accession NC_008699
Length 4,985,871

Click here to switch to the map view.

The map label for this gene is 119718588

Identifier: 119718588

GI number: 119718588

Start: 4619415

End: 4619855

Strand: Reverse

Name: 119718588

Synonym: Noca_4369

Alternate gene names: NA

Gene position: 4619855-4619415 (Counterclockwise)

Preceding gene: 119718594

Following gene: 119718587

Centisome position: 92.66

GC content: 70.98

Gene sequence:

>441_bases
GTGGACCTCCAGGAGATCAGCGACCGCCTCGAGATCGAGGGCGTGCTCGTCCGCTACACGCGCGCGATCGACGCCGGCGA
CTGGGACGCGCTCGACAGCGTGTTCACCCCGGACGCGGAGATCGACTACACCGAGTCCGGCGGCATCGCCGACACCTATC
CCGCGGTGAAGGCCTGGTTGGCCGAGGTGCTGCCGGCCTTCTTCCCGCGCCGGATGCACTCGCTGGCCCAGGTGGACGCC
CGGCTCGACGGCGACACCGCACAGGTGACGGCGTACTTCCACAACCCGATGCCGCTGCCCGAGCCCGGGGGAGCCGACGG
CCCGGACGCGACGAACATCGTCGAGTTCGGGGGGCTGTACCACCACACGATGGTGCGCACCGCCGACGGCTGGCGCAGCC
GCCGCCTGCACGAGGAGATCGTCTGGAAGCGGGGCCTCTGA

Upstream 100 bases:

>100_bases
GAGCGGCGCGTAGAACTGCGCCTGGGTCATCGCCTCGGCGTAGGTGAATCGCATGGGCCACACAGTAGAACGTGTTTCAG
TTTTCTGCCAGAGTGTCTCC

Downstream 100 bases:

>100_bases
GCGCACTCGGGCGGCGCCGGCCCGTTTGGTGGGGCTTGTGTGGGTCACCGACAATGGTGACGACGTACGACGCCACGACC
CGGGGGAGATGACCGCGTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MDLQEISDRLEIEGVLVRYTRAIDAGDWDALDSVFTPDAEIDYTESGGIADTYPAVKAWLAEVLPAFFPRRMHSLAQVDA
RLDGDTAQVTAYFHNPMPLPEPGGADGPDATNIVEFGGLYHHTMVRTADGWRSRRLHEEIVWKRGL

Sequences:

>Translated_146_residues
MDLQEISDRLEIEGVLVRYTRAIDAGDWDALDSVFTPDAEIDYTESGGIADTYPAVKAWLAEVLPAFFPRRMHSLAQVDA
RLDGDTAQVTAYFHNPMPLPEPGGADGPDATNIVEFGGLYHHTMVRTADGWRSRRLHEEIVWKRGL
>Mature_146_residues
MDLQEISDRLEIEGVLVRYTRAIDAGDWDALDSVFTPDAEIDYTESGGIADTYPAVKAWLAEVLPAFFPRRMHSLAQVDA
RLDGDTAQVTAYFHNPMPLPEPGGADGPDATNIVEFGGLYHHTMVRTADGWRSRRLHEEIVWKRGL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16312; Mature: 16312

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLQEISDRLEIEGVLVRYTRAIDAGDWDALDSVFTPDAEIDYTESGGIADTYPAVKAWL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
AEVLPAFFPRRMHSLAQVDARLDGDTAQVTAYFHNPMPLPEPGGADGPDATNIVEFGGLY
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCHH
HHTMVRTADGWRSRRLHEEIVWKRGL
HHHHHHCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLQEISDRLEIEGVLVRYTRAIDAGDWDALDSVFTPDAEIDYTESGGIADTYPAVKAWL
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
AEVLPAFFPRRMHSLAQVDARLDGDTAQVTAYFHNPMPLPEPGGADGPDATNIVEFGGLY
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHCCHH
HHTMVRTADGWRSRRLHEEIVWKRGL
HHHHHHCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]