| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119718372
Identifier: 119718372
GI number: 119718372
Start: 4387071
End: 4389662
Strand: Reverse
Name: 119718372
Synonym: Noca_4153
Alternate gene names: NA
Gene position: 4389662-4387071 (Counterclockwise)
Preceding gene: 119718373
Following gene: 119718371
Centisome position: 88.04
GC content: 71.6
Gene sequence:
>2592_bases ATGCCGCGCCCGTTCCGGATCCTCGCCGCTCTCTTCGCCCTGGCCCTGGCCGCAGCGGTGCTGCCCCTGGCCTGGTCGTC GGCGACCGCCGCGCCGAACGACGCGATCTACCGGCCGCTGAAGGGCTTCGAGCCGACCGGGCCGCGGGTGCGGGTCGATC CGGACCAGTACGCCGCGGTCCGCGTCGACACCGGCCTGGTGCGCGCGGCGCTGCGTGGCGCCCCGCGGGCCGGCGCGGCC GGCTCGACCGTCTTCGCGGTCCCGACCCCTGCGGGCGGCACCGAGCGGTTCGCCGTCCAGCGGACCCAGCTGATGCAGGC CGGGCTGGCCGCCGCCCACCCCGAGATCGCCACCTGGGCCGGCCGGTCGCTCGACCACCCCGGCACCACCATCGCGATGG ACGTGACCCCGATGGGCTTCCACGCCTCGGTGCGGTCCGGCGGGCAGACGGCGTGGTACGTCGACCCCGCGTACAACCGG CGCGGCACCACCGAGCACCTCAGCTACTACGGCGGCAGCCTGCCCCAGGAGACCGAGCGGGTCGCCGAGCGGGAGCTGCC GGACGTGCAGCGGGCGATCGAGCGGCGGGCCACGCAACGCCGGGCCGCGGACGACACCGTCCAGCAGCGGGTCTACCGGC TCGCGCTGGTCAGCGACCCGACGTACGCGACGTACTTCGGCAGCGCCAACGTGACGGCCGAGAAGGTCACGCTGATGAAC CGCGTCAACCAGATCTACAACGACGACCTCGCGATCAACATGATCCTGGTCGACGGCACCGACGAGCTCAACCTCGACAC CGAGGCGAAGGCGTCCGGGCCGAACGGACCGTGCGGCGCGCACCCGTGCTTCGACCCGCCGTCGGGCGACCCGGAGTCGC CGGACTACGTCCCGGGCCAGCTGGAGTACTGCGACGTCCCGGGCCTGGTTCGCAACCAGGTCGTGCTCGGGCAGATCATC GGCGCCTCGAACTACGACATCGGGCACCTGATGCTCGGCGTCAACGGCGGCGGCATCGCCGGCCTCGGCGTCGTCGGCAG CATCGAGAAGGGCCTGGGCTGCACCGGCCTGCCCGACCCGACCGGCGACTTCATGGCGATCGACTACGTCGCCCACGAGA TGGGTCACCAGTTCGGCGGCAACCACACGTTCAACGGCGTGCAGTACGCCTGCTCGGGCGGCAACCGCAACGCCGGCACC TCGGTCGAGCCGGGCTCCGGCTCCTCGGTGATGGCCTACGCCGGCATCTGCCTGCAGGACGACCTGCAGCCGCACACCGA CCCGTACTTCTCCCAGCGCACCCTGGACGAGGTGAACGCCTACACCAGCGGTACGGCGCCCGCGCCGGTCGAGGTGCAGA ACGTCTCGCTCACCGGCTTCGACACCGACGGCGAGTCGATCATGATCGGCTACCCGGGCGGCGGGGCGCCGGTCACGCTG ACCCGCGGCTCGACGTACACCGCGGCGAACATCGAGACGGCCGTCGAGGGCCTGACCGGCGAGAACGTCACGGTCACCGG GTGGGGTTACGACCCGTACGCCGGCGGCTCGACGTACCCCGCGCCGCTGACCGCACCCGACGACACCGGCTTCCAGGTCA TCTTCGCCGGCGACGCCGACCCGTACACCGCGGACAGCGACCGTGCGGACATGAACGACCTGCAGGTCACCACCTCGTCG GCGGGCGTGACTGCGTTCGTCGGCGAGACCGCGAAGGGCGGTGAGCCCGGCAACCACGGGTTCGCGATCAACCCGACCGA CAACCGCAACCCGATCGTGACGGCGCCGGCGAACAAGACCATCCCGACCCGCACGCCGTTCACCCTCACCGGGTCGGGCA CCGACCCCGACGGCGACCCGCTCGTCTACGTGTGGGAGCAGAACGACGACGCGTCCGGCCACGCCGGCACCGCGCTGGTC AGCAACACCAAGAAGTGGGGGCCGCTGTTCCGGGTGTTCGGGACGTTCGCGAACGTCACCGACGACGGGACGCTCCAATA CCACTCGCCGGGGGAGAACGTCGCGACGGCGGCCGGTCGGACGCGCACCTTCCCCGACCTCGCGCAGATCCTGGCCGGCA ACACCAACGCCGAGACCGGCACCTGCCCACGGGTGCCGCCGCTGCCGGACAACCTCGACGACTACGTCCCGGTGCGGCCG CGGCCGCGCGACTGCTACTCGGAGTTCCTGCCCACCTCGGCGTACCAGGGTGCGCTGCACTTCCGGCTGACCGCGCGCGA CCAGATCGTGGGCGGCGGCGGCGTCGGCTCCGACCAGGTCACGCTCCGGGTCGCCAGCAGCGCCGGGCCGTTCCTGGTCA CCTCGTTCGCCAAGGGCGGCAAGGTCGACGGTGGCAAGAAGAAGGCGATCACCTGGAAGGTCAACGGCACCAAGAAGCTC GCCAAGAGGATCCGGATCGTGCTGTCCACCGACAACGGCCGGACCTGGGACAACGTGCTCGCCACGACCGCCAACGACGG CCGGGCCCGGGTCCGCATCCCCAACGTCCGCACCGGCAAGGCGTGGCTGAAGATCGAGGCGGTCGGCAACTACTTCTTCG ACCTCAGCGACCGCTCCTTCCGGATCCGCTAA
Upstream 100 bases:
>100_bases AGGGCACGCTGCTCGCCCGCTGGCTCACCGGAGTCCCCGCGGTCCTTTAGGCTGCTGGCACCGCACCTGTTGAGGGGTGC GGCTCACCGAGGGAGACCCC
Downstream 100 bases:
>100_bases CTGGGATAGTCCCTGACGATTGTGCGGTCGTTCGCGCCGGAACGGCCCGCAATCGTCAGGGACTATCGCCCCGGCTCTGC GGTGGCCGGCTCACGGTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 863; Mature: 862
Protein sequence:
>863_residues MPRPFRILAALFALALAAAVLPLAWSSATAAPNDAIYRPLKGFEPTGPRVRVDPDQYAAVRVDTGLVRAALRGAPRAGAA GSTVFAVPTPAGGTERFAVQRTQLMQAGLAAAHPEIATWAGRSLDHPGTTIAMDVTPMGFHASVRSGGQTAWYVDPAYNR RGTTEHLSYYGGSLPQETERVAERELPDVQRAIERRATQRRAADDTVQQRVYRLALVSDPTYATYFGSANVTAEKVTLMN RVNQIYNDDLAINMILVDGTDELNLDTEAKASGPNGPCGAHPCFDPPSGDPESPDYVPGQLEYCDVPGLVRNQVVLGQII GASNYDIGHLMLGVNGGGIAGLGVVGSIEKGLGCTGLPDPTGDFMAIDYVAHEMGHQFGGNHTFNGVQYACSGGNRNAGT SVEPGSGSSVMAYAGICLQDDLQPHTDPYFSQRTLDEVNAYTSGTAPAPVEVQNVSLTGFDTDGESIMIGYPGGGAPVTL TRGSTYTAANIETAVEGLTGENVTVTGWGYDPYAGGSTYPAPLTAPDDTGFQVIFAGDADPYTADSDRADMNDLQVTTSS AGVTAFVGETAKGGEPGNHGFAINPTDNRNPIVTAPANKTIPTRTPFTLTGSGTDPDGDPLVYVWEQNDDASGHAGTALV SNTKKWGPLFRVFGTFANVTDDGTLQYHSPGENVATAAGRTRTFPDLAQILAGNTNAETGTCPRVPPLPDNLDDYVPVRP RPRDCYSEFLPTSAYQGALHFRLTARDQIVGGGGVGSDQVTLRVASSAGPFLVTSFAKGGKVDGGKKKAITWKVNGTKKL AKRIRIVLSTDNGRTWDNVLATTANDGRARVRIPNVRTGKAWLKIEAVGNYFFDLSDRSFRIR
Sequences:
>Translated_863_residues MPRPFRILAALFALALAAAVLPLAWSSATAAPNDAIYRPLKGFEPTGPRVRVDPDQYAAVRVDTGLVRAALRGAPRAGAA GSTVFAVPTPAGGTERFAVQRTQLMQAGLAAAHPEIATWAGRSLDHPGTTIAMDVTPMGFHASVRSGGQTAWYVDPAYNR RGTTEHLSYYGGSLPQETERVAERELPDVQRAIERRATQRRAADDTVQQRVYRLALVSDPTYATYFGSANVTAEKVTLMN RVNQIYNDDLAINMILVDGTDELNLDTEAKASGPNGPCGAHPCFDPPSGDPESPDYVPGQLEYCDVPGLVRNQVVLGQII GASNYDIGHLMLGVNGGGIAGLGVVGSIEKGLGCTGLPDPTGDFMAIDYVAHEMGHQFGGNHTFNGVQYACSGGNRNAGT SVEPGSGSSVMAYAGICLQDDLQPHTDPYFSQRTLDEVNAYTSGTAPAPVEVQNVSLTGFDTDGESIMIGYPGGGAPVTL TRGSTYTAANIETAVEGLTGENVTVTGWGYDPYAGGSTYPAPLTAPDDTGFQVIFAGDADPYTADSDRADMNDLQVTTSS AGVTAFVGETAKGGEPGNHGFAINPTDNRNPIVTAPANKTIPTRTPFTLTGSGTDPDGDPLVYVWEQNDDASGHAGTALV SNTKKWGPLFRVFGTFANVTDDGTLQYHSPGENVATAAGRTRTFPDLAQILAGNTNAETGTCPRVPPLPDNLDDYVPVRP RPRDCYSEFLPTSAYQGALHFRLTARDQIVGGGGVGSDQVTLRVASSAGPFLVTSFAKGGKVDGGKKKAITWKVNGTKKL AKRIRIVLSTDNGRTWDNVLATTANDGRARVRIPNVRTGKAWLKIEAVGNYFFDLSDRSFRIR >Mature_862_residues PRPFRILAALFALALAAAVLPLAWSSATAAPNDAIYRPLKGFEPTGPRVRVDPDQYAAVRVDTGLVRAALRGAPRAGAAG STVFAVPTPAGGTERFAVQRTQLMQAGLAAAHPEIATWAGRSLDHPGTTIAMDVTPMGFHASVRSGGQTAWYVDPAYNRR GTTEHLSYYGGSLPQETERVAERELPDVQRAIERRATQRRAADDTVQQRVYRLALVSDPTYATYFGSANVTAEKVTLMNR VNQIYNDDLAINMILVDGTDELNLDTEAKASGPNGPCGAHPCFDPPSGDPESPDYVPGQLEYCDVPGLVRNQVVLGQIIG ASNYDIGHLMLGVNGGGIAGLGVVGSIEKGLGCTGLPDPTGDFMAIDYVAHEMGHQFGGNHTFNGVQYACSGGNRNAGTS VEPGSGSSVMAYAGICLQDDLQPHTDPYFSQRTLDEVNAYTSGTAPAPVEVQNVSLTGFDTDGESIMIGYPGGGAPVTLT RGSTYTAANIETAVEGLTGENVTVTGWGYDPYAGGSTYPAPLTAPDDTGFQVIFAGDADPYTADSDRADMNDLQVTTSSA GVTAFVGETAKGGEPGNHGFAINPTDNRNPIVTAPANKTIPTRTPFTLTGSGTDPDGDPLVYVWEQNDDASGHAGTALVS NTKKWGPLFRVFGTFANVTDDGTLQYHSPGENVATAAGRTRTFPDLAQILAGNTNAETGTCPRVPPLPDNLDDYVPVRPR PRDCYSEFLPTSAYQGALHFRLTARDQIVGGGGVGSDQVTLRVASSAGPFLVTSFAKGGKVDGGKKKAITWKVNGTKKLA KRIRIVLSTDNGRTWDNVLATTANDGRARVRIPNVRTGKAWLKIEAVGNYFFDLSDRSFRIR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91246; Mature: 91115
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRPFRILAALFALALAAAVLPLAWSSATAAPNDAIYRPLKGFEPTGPRVRVDPDQYAAV CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCEEEE RVDTGLVRAALRGAPRAGAAGSTVFAVPTPAGGTERFAVQRTQLMQAGLAAAHPEIATWA EECHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHC GRSLDHPGTTIAMDVTPMGFHASVRSGGQTAWYVDPAYNRRGTTEHLSYYGGSLPQETER CCCCCCCCCEEEEEECCCCEEHHHCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHH VAERELPDVQRAIERRATQRRAADDTVQQRVYRLALVSDPTYATYFGSANVTAEKVTLMN HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEECCCCCCHHHHHHHH RVNQIYNDDLAINMILVDGTDELNLDTEAKASGPNGPCGAHPCFDPPSGDPESPDYVPGQ HHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC LEYCDVPGLVRNQVVLGQIIGASNYDIGHLMLGVNGGGIAGLGVVGSIEKGLGCTGLPDP EEEECCCCHHHCCEEEEEEECCCCCCCEEEEEEECCCCEEEECEEECHHHCCCCCCCCCC TGDFMAIDYVAHEMGHQFGGNHTFNGVQYACSGGNRNAGTSVEPGSGSSVMAYAGICLQD CCCEEEHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECEEEEC DLQPHTDPYFSQRTLDEVNAYTSGTAPAPVEVQNVSLTGFDTDGESIMIGYPGGGAPVTL CCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCEEE TRGSTYTAANIETAVEGLTGENVTVTGWGYDPYAGGSTYPAPLTAPDDTGFQVIFAGDAD ECCCEEEECCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC PYTADSDRADMNDLQVTTSSAGVTAFVGETAKGGEPGNHGFAINPTDNRNPIVTAPANKT CCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCEEECCCCCC IPTRTPFTLTGSGTDPDGDPLVYVWEQNDDASGHAGTALVSNTKKWGPLFRVFGTFANVT CCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCC DDGTLQYHSPGENVATAAGRTRTFPDLAQILAGNTNAETGTCPRVPPLPDNLDDYVPVRP CCCEEEECCCCCCHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC RPRDCYSEFLPTSAYQGALHFRLTARDQIVGGGGVGSDQVTLRVASSAGPFLVTSFAKGG CCHHHHHHHCCCCCCCCEEEEEEEECCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCC KVDGGKKKAITWKVNGTKKLAKRIRIVLSTDNGRTWDNVLATTANDGRARVRIPNVRTGK CCCCCCCEEEEEEECCHHHHHCEEEEEEECCCCCCHHHEEEECCCCCEEEEECCCCCCCC AWLKIEAVGNYFFDLSDRSFRIR EEEEEEEECCEEEEECCCCEEEC >Mature Secondary Structure PRPFRILAALFALALAAAVLPLAWSSATAAPNDAIYRPLKGFEPTGPRVRVDPDQYAAV CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCEEEECCCCEEEE RVDTGLVRAALRGAPRAGAAGSTVFAVPTPAGGTERFAVQRTQLMQAGLAAAHPEIATWA EECHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHC GRSLDHPGTTIAMDVTPMGFHASVRSGGQTAWYVDPAYNRRGTTEHLSYYGGSLPQETER CCCCCCCCCEEEEEECCCCEEHHHCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCHHHHH VAERELPDVQRAIERRATQRRAADDTVQQRVYRLALVSDPTYATYFGSANVTAEKVTLMN HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEEEEECCCCCCHHHHHHHH RVNQIYNDDLAINMILVDGTDELNLDTEAKASGPNGPCGAHPCFDPPSGDPESPDYVPGQ HHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC LEYCDVPGLVRNQVVLGQIIGASNYDIGHLMLGVNGGGIAGLGVVGSIEKGLGCTGLPDP EEEECCCCHHHCCEEEEEEECCCCCCCEEEEEEECCCCEEEECEEECHHHCCCCCCCCCC TGDFMAIDYVAHEMGHQFGGNHTFNGVQYACSGGNRNAGTSVEPGSGSSVMAYAGICLQD CCCEEEHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECEEEEC DLQPHTDPYFSQRTLDEVNAYTSGTAPAPVEVQNVSLTGFDTDGESIMIGYPGGGAPVTL CCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEEEEECCCCCEEEEEECCCCCCEEE TRGSTYTAANIETAVEGLTGENVTVTGWGYDPYAGGSTYPAPLTAPDDTGFQVIFAGDAD ECCCEEEECCHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC PYTADSDRADMNDLQVTTSSAGVTAFVGETAKGGEPGNHGFAINPTDNRNPIVTAPANKT CCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCEEECCCCCC IPTRTPFTLTGSGTDPDGDPLVYVWEQNDDASGHAGTALVSNTKKWGPLFRVFGTFANVT CCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCC DDGTLQYHSPGENVATAAGRTRTFPDLAQILAGNTNAETGTCPRVPPLPDNLDDYVPVRP CCCEEEECCCCCCHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC RPRDCYSEFLPTSAYQGALHFRLTARDQIVGGGGVGSDQVTLRVASSAGPFLVTSFAKGG CCHHHHHHHCCCCCCCCEEEEEEEECCEEEECCCCCCCEEEEEEECCCCCEEEEECCCCC KVDGGKKKAITWKVNGTKKLAKRIRIVLSTDNGRTWDNVLATTANDGRARVRIPNVRTGK CCCCCCCEEEEEEECCHHHHHCEEEEEEECCCCCCHHHEEEECCCCCEEEEECCCCCCCC AWLKIEAVGNYFFDLSDRSFRIR EEEEEEEECCEEEEECCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA