| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is 119718313
Identifier: 119718313
GI number: 119718313
Start: 4325003
End: 4326019
Strand: Reverse
Name: 119718313
Synonym: Noca_4094
Alternate gene names: NA
Gene position: 4326019-4325003 (Counterclockwise)
Preceding gene: 119718314
Following gene: 119718312
Centisome position: 86.77
GC content: 72.27
Gene sequence:
>1017_bases ATGCCGACATCCCATTCCCGCTCTGCCGCCCCTGGGGCCCACGCCCACCGGGTGTTCGGGCCGCTGATCTCGACCGGTGA CGTCGAGGCGCACGAACGCCTCTTCTGCGACGTGTTCGGCATGGAGGTGGCCGGCCGCCACACCCTGGATGGCGGCCGCG CCGAGGCGCTCTTCGGCGTCGCCCTCGACCGGGTGGATCTGGTCGCGTTGCAGACCCCGGCCACTGCGTCCGGTGTCGTC CTGTGCCGCTTCGACCCGGTCTGCGAGGAGACGGTCCGCTCGTACGCGACCCGGGTCGACCGCGACGCCCTCAAGGTGAT CGACTTCTACGCACCCGACTACGAGGCGGCGCTCGAGCACGCCCGGGGGCTCGGCTATGAGGTCGTTGAGGCCGAGGCGG AGTACGACCTGCCCGAGGGCAGGTTCCGGGAGGCGCACCTGTGGGGCCCGGACAACGTCGTGACGGCGTTCCTCGGCGGA CCGGCCGGGTTCTTCCGCGACTTCGCCCAGGTCACCGACCGACGGGTGAGCGAGGTGCAGAGCATCTCGGCTCCACTCAG CGACGCCGAACCCGCCGTGCGGTTCTATGCCGAGGTCTTCGGCTGGGACGTCGTCTACGAGTACGCTATCCACGACCCGT CGTTCGCGGACCTGCTGGGGGTCGACGCGCCGCTTCAGCTCCGCTCGCGCAACGTCGGCCCGTCGACGCGGGAGCCGTAC CTCGGCCTGATCGACTACGGGCTCCCGGCCGACGTCGGTGGCTCGCTGCTCGGCCGCCCCGCCCCGCCGCGGCGTGGGCT CCTCGGCGCCGTCGTCCTCGCGGACGACCTCGACGCGGTCCGTGCCCGTGCCGGGGAGTCCGTCGTCGGCACCACGGGCC TCGATCTGTCGCCGTTCGCCGGGGCTCGTGCTGTCCTGATCCACCCTCCCCACCAGATCCCGCACCTGGTCGTGGAGGTG GCCGCCCAGGAGCCGGTACCGGAGCAGGCCGGGAACAGGCCGGGACCCGGCGACTGA
Upstream 100 bases:
>100_bases GCCTCGTCACGGGGTGCAGGTGCTCACCGTGCGCGAGGACCGATCGATCGCCCTGCCCGCCCGACCGGCCGCCACGGCCG CACGTCAAGGAGGACGGTTC
Downstream 100 bases:
>100_bases GCGACGAATCCTCGGAATCGCTTGACCTGAGCGCTCGCGGCAAGCACGATAGAGAAACTGAAACGACGTTTCTCACTGTG GAATGCACCTCGTGAGCAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MPTSHSRSAAPGAHAHRVFGPLISTGDVEAHERLFCDVFGMEVAGRHTLDGGRAEALFGVALDRVDLVALQTPATASGVV LCRFDPVCEETVRSYATRVDRDALKVIDFYAPDYEAALEHARGLGYEVVEAEAEYDLPEGRFREAHLWGPDNVVTAFLGG PAGFFRDFAQVTDRRVSEVQSISAPLSDAEPAVRFYAEVFGWDVVYEYAIHDPSFADLLGVDAPLQLRSRNVGPSTREPY LGLIDYGLPADVGGSLLGRPAPPRRGLLGAVVLADDLDAVRARAGESVVGTTGLDLSPFAGARAVLIHPPHQIPHLVVEV AAQEPVPEQAGNRPGPGD
Sequences:
>Translated_338_residues MPTSHSRSAAPGAHAHRVFGPLISTGDVEAHERLFCDVFGMEVAGRHTLDGGRAEALFGVALDRVDLVALQTPATASGVV LCRFDPVCEETVRSYATRVDRDALKVIDFYAPDYEAALEHARGLGYEVVEAEAEYDLPEGRFREAHLWGPDNVVTAFLGG PAGFFRDFAQVTDRRVSEVQSISAPLSDAEPAVRFYAEVFGWDVVYEYAIHDPSFADLLGVDAPLQLRSRNVGPSTREPY LGLIDYGLPADVGGSLLGRPAPPRRGLLGAVVLADDLDAVRARAGESVVGTTGLDLSPFAGARAVLIHPPHQIPHLVVEV AAQEPVPEQAGNRPGPGD >Mature_337_residues PTSHSRSAAPGAHAHRVFGPLISTGDVEAHERLFCDVFGMEVAGRHTLDGGRAEALFGVALDRVDLVALQTPATASGVVL CRFDPVCEETVRSYATRVDRDALKVIDFYAPDYEAALEHARGLGYEVVEAEAEYDLPEGRFREAHLWGPDNVVTAFLGGP AGFFRDFAQVTDRRVSEVQSISAPLSDAEPAVRFYAEVFGWDVVYEYAIHDPSFADLLGVDAPLQLRSRNVGPSTREPYL GLIDYGLPADVGGSLLGRPAPPRRGLLGAVVLADDLDAVRARAGESVVGTTGLDLSPFAGARAVLIHPPHQIPHLVVEVA AQEPVPEQAGNRPGPGD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36177; Mature: 36046
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTSHSRSAAPGAHAHRVFGPLISTGDVEAHERLFCDVFGMEVAGRHTLDGGRAEALFGV CCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHH ALDRVDLVALQTPATASGVVLCRFDPVCEETVRSYATRVDRDALKVIDFYAPDYEAALEH HHHHEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHH ARGLGYEVVEAEAEYDLPEGRFREAHLWGPDNVVTAFLGGPAGFFRDFAQVTDRRVSEVQ HHCCCEEEEECCCCCCCCCCCCEEEEECCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHH SISAPLSDAEPAVRFYAEVFGWDVVYEYAIHDPSFADLLGVDAPLQLRSRNVGPSTREPY HHHCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHCCCCCHHHHCCCCCCCCCCCC LGLIDYGLPADVGGSLLGRPAPPRRGLLGAVVLADDLDAVRARAGESVVGTTGLDLSPFA EEEEECCCCCCCCCHHCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCEEECCCCCCCCCC GARAVLIHPPHQIPHLVVEVAAQEPVPEQAGNRPGPGD CCCEEEECCCCHHHHHHHHHHHCCCCHHHCCCCCCCCC >Mature Secondary Structure PTSHSRSAAPGAHAHRVFGPLISTGDVEAHERLFCDVFGMEVAGRHTLDGGRAEALFGV CCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHCCCCCCCCCCHHHHHHH ALDRVDLVALQTPATASGVVLCRFDPVCEETVRSYATRVDRDALKVIDFYAPDYEAALEH HHHHEEEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHH ARGLGYEVVEAEAEYDLPEGRFREAHLWGPDNVVTAFLGGPAGFFRDFAQVTDRRVSEVQ HHCCCEEEEECCCCCCCCCCCCEEEEECCCCHHEEEECCCCHHHHHHHHHHHHHHHHHHH SISAPLSDAEPAVRFYAEVFGWDVVYEYAIHDPSFADLLGVDAPLQLRSRNVGPSTREPY HHHCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCHHHHHCCCCCHHHHCCCCCCCCCCCC LGLIDYGLPADVGGSLLGRPAPPRRGLLGAVVLADDLDAVRARAGESVVGTTGLDLSPFA EEEEECCCCCCCCCHHCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCEEECCCCCCCCCC GARAVLIHPPHQIPHLVVEVAAQEPVPEQAGNRPGPGD CCCEEEECCCCHHHHHHHHHHHCCCCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA