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The map label for this gene is xp55 [H]

Identifier: 119718301

GI number: 119718301

Start: 4310245

End: 4311825

Strand: Reverse

Name: xp55 [H]

Synonym: Noca_4082

Alternate gene names: 119718301

Gene position: 4311825-4310245 (Counterclockwise)

Preceding gene: 119718306

Following gene: 119718300

Centisome position: 86.48

GC content: 66.41

Gene sequence:

>1581_bases
ATGACAAGCACAGCACGTAGTCGCTCGGCACGAGCCCGGGCCGGGCTCGTAGCGGTCGCCGCAGCGGCCGCCCTCCTCCT
CGCCGCGTGCGGGGGAGGCTCGGGTGGCAACCAGAGCGACGGGCCGGAGACCACGAAGATCACCGACCTGGTGGTCGACA
GCGGTCAGGAGCCCGACTCCCTGGACCCCTTCTACCGCAACACCGCGGAGGCGCAACGCTTCTACCGCCTGGCCTACAGC
AGCATCCTGAAGTGGAACGAGGACGGTTCGCTCGCCCCTGACCTGGCGGCGGAGCTGCCCGAGGTGACCGACGGCGGCAA
GACGTGGACGATCACGCTCCGCGACGGAGTCACCTTCCATGACGGCACACCGCTGACGGCCGACGACGTGGTCTTCACGT
TCGAGGCCGCGGCGAACCCCGAGAACGGTGCCGTCTGGCTCTCCTCGCTGAGCTACATGGAATCCGTCAAGGCCGTCGAC
GACACCACGGTCGAGCTGAAGCTGACCGAGCCGTACGCCTACATGGGTAGCCGGCTCGCGATGATACCGATCCTGTCGGA
CGAGACGCCGTACAAGACCAACGACACCTATGCCACAACCGAGAACGGCAGTGGTCCGTACGTGCTGGAGAAGCTCAACC
GCGGCGACTCCATCGAGATGGCGCGGTTCGGAGACTACTTCGGCGACCAGCCGCCCTTCGAGACCATCACCTTCAAGGTC
GTTCCGGAGGACGCCTCCCGGATCGCTCGCCTGCTCAACGGTGAGTCCCACATCCTGCCGAACGTACCCACCGACCAGGT
CGAGCTGATCAAGGACCGCGGCGCGAACGCCGCGATCGTCGAGAAGAACGTCGTCCGCCTGTTCCTCTACCCGTCGATGA
ACCCCGACCGGCCGACCTCGAACGTCGACTTCCGGCTTGCGATCGCCTATGCGGCCGACCGGCAGCGGATCGTGGACCAG
GTGTACGGCGGCGCGGGCCGTCCGAACAGCACCTACCTGACCTACGGATCGCTCTACCACGACGAGGAGGTCGGGATGAC
CTTCGGTTCGACGCCCGACATCGAGGCCGCGAAGGAGCACCTCGAGGCGTCGGGCTACGACACGAGCCGCACCCTGAAGA
TCATCGCGGTGAACAAGCCGAGCGTGGTGAGAGCGATGACGATCCTGCAGGCCAACCTCAAGGCGATCGGCGTGACCGCC
ACCGTCGAGTCGCAGGAGGTGGCCGGCTTCTACTCGGCGCTCATCTCCGGGGAGTACGACCTGATCGCCTTCGACAGCCC
GGCGTCGACGTCGGCGGGCTTCGCTCCCGACTACGTCAACGGTGGCCTGAACAGCAAGGCGGCGAACAACTTCGCGAAGT
TCAACGACCCGGAGATGGATCGGCTCCTCGACACGGCCATGACGGCCCAGACCGAGGAGGAGCAGGCCGCGGCCTGGAAG
GCGGTCCAGGAGCGTGACGTCGCGACGCAGGGCAACATCCAGCTCGTCGCGGCTCAGGTCAGCGAGGCATGGTCCAAGGA
CCTGGTGGGCTACGAGCCCTCCGGGCTCCTGTGGCTGAACACCGTGCTCGACGTCAAGTAG

Upstream 100 bases:

>100_bases
CCAAGCAGAGGAACGGCGTTTCGGTAGGTGGAACAGCCCGGCAATCGGGGGTGTCGCCTCGCACATCCAAGCCGCCGTCC
GATCGGATGGGAGTCCGGAC

Downstream 100 bases:

>100_bases
CGCGAGCACGACCAGCATGGGCCAGGTGTCGGGATGGGATCGTCCATCCCGGCACCCGGGTCCGTCCCCGGGTCGGCGCC
CACTACGGCGCGTGGCCCGG

Product: extracellular solute-binding protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 526; Mature: 525

Protein sequence:

>526_residues
MTSTARSRSARARAGLVAVAAAAALLLAACGGGSGGNQSDGPETTKITDLVVDSGQEPDSLDPFYRNTAEAQRFYRLAYS
SILKWNEDGSLAPDLAAELPEVTDGGKTWTITLRDGVTFHDGTPLTADDVVFTFEAAANPENGAVWLSSLSYMESVKAVD
DTTVELKLTEPYAYMGSRLAMIPILSDETPYKTNDTYATTENGSGPYVLEKLNRGDSIEMARFGDYFGDQPPFETITFKV
VPEDASRIARLLNGESHILPNVPTDQVELIKDRGANAAIVEKNVVRLFLYPSMNPDRPTSNVDFRLAIAYAADRQRIVDQ
VYGGAGRPNSTYLTYGSLYHDEEVGMTFGSTPDIEAAKEHLEASGYDTSRTLKIIAVNKPSVVRAMTILQANLKAIGVTA
TVESQEVAGFYSALISGEYDLIAFDSPASTSAGFAPDYVNGGLNSKAANNFAKFNDPEMDRLLDTAMTAQTEEEQAAAWK
AVQERDVATQGNIQLVAAQVSEAWSKDLVGYEPSGLLWLNTVLDVK

Sequences:

>Translated_526_residues
MTSTARSRSARARAGLVAVAAAAALLLAACGGGSGGNQSDGPETTKITDLVVDSGQEPDSLDPFYRNTAEAQRFYRLAYS
SILKWNEDGSLAPDLAAELPEVTDGGKTWTITLRDGVTFHDGTPLTADDVVFTFEAAANPENGAVWLSSLSYMESVKAVD
DTTVELKLTEPYAYMGSRLAMIPILSDETPYKTNDTYATTENGSGPYVLEKLNRGDSIEMARFGDYFGDQPPFETITFKV
VPEDASRIARLLNGESHILPNVPTDQVELIKDRGANAAIVEKNVVRLFLYPSMNPDRPTSNVDFRLAIAYAADRQRIVDQ
VYGGAGRPNSTYLTYGSLYHDEEVGMTFGSTPDIEAAKEHLEASGYDTSRTLKIIAVNKPSVVRAMTILQANLKAIGVTA
TVESQEVAGFYSALISGEYDLIAFDSPASTSAGFAPDYVNGGLNSKAANNFAKFNDPEMDRLLDTAMTAQTEEEQAAAWK
AVQERDVATQGNIQLVAAQVSEAWSKDLVGYEPSGLLWLNTVLDVK
>Mature_525_residues
TSTARSRSARARAGLVAVAAAAALLLAACGGGSGGNQSDGPETTKITDLVVDSGQEPDSLDPFYRNTAEAQRFYRLAYSS
ILKWNEDGSLAPDLAAELPEVTDGGKTWTITLRDGVTFHDGTPLTADDVVFTFEAAANPENGAVWLSSLSYMESVKAVDD
TTVELKLTEPYAYMGSRLAMIPILSDETPYKTNDTYATTENGSGPYVLEKLNRGDSIEMARFGDYFGDQPPFETITFKVV
PEDASRIARLLNGESHILPNVPTDQVELIKDRGANAAIVEKNVVRLFLYPSMNPDRPTSNVDFRLAIAYAADRQRIVDQV
YGGAGRPNSTYLTYGSLYHDEEVGMTFGSTPDIEAAKEHLEASGYDTSRTLKIIAVNKPSVVRAMTILQANLKAIGVTAT
VESQEVAGFYSALISGEYDLIAFDSPASTSAGFAPDYVNGGLNSKAANNFAKFNDPEMDRLLDTAMTAQTEEEQAAAWKA
VQERDVATQGNIQLVAAQVSEAWSKDLVGYEPSGLLWLNTVLDVK

Specific function: Required for transport of an unidentified substrate [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1789966, Length=436, Percent_Identity=27.0642201834862, Blast_Score=122, Evalue=8e-29,
Organism=Escherichia coli, GI1787052, Length=519, Percent_Identity=24.8554913294798, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1787762, Length=483, Percent_Identity=22.9813664596273, Blast_Score=112, Evalue=8e-26,
Organism=Escherichia coli, GI87081878, Length=501, Percent_Identity=21.9560878243513, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI1789887, Length=436, Percent_Identity=23.6238532110092, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787495, Length=535, Percent_Identity=24.1121495327103, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787551, Length=439, Percent_Identity=27.1070615034169, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1789397, Length=449, Percent_Identity=23.162583518931, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786256, Length=171, Percent_Identity=25.7309941520468, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: 660 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 56768; Mature: 56636

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTARSRSARARAGLVAVAAAAALLLAACGGGSGGNQSDGPETTKITDLVVDSGQEPDS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
LDPFYRNTAEAQRFYRLAYSSILKWNEDGSLAPDLAAELPEVTDGGKTWTITLRDGVTFH
CCHHHHCHHHHHHHHHHHHHHHHEECCCCCCCCHHHHCCCCCCCCCCEEEEEEECCEEEE
DGTPLTADDVVFTFEAAANPENGAVWLSSLSYMESVKAVDDTTVELKLTEPYAYMGSRLA
CCCCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEE
MIPILSDETPYKTNDTYATTENGSGPYVLEKLNRGDSIEMARFGDYFGDQPPFETITFKV
EEEEECCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCEEHHHHHHHCCCCCCCCEEEEEE
VPEDASRIARLLNGESHILPNVPTDQVELIKDRGANAAIVEKNVVRLFLYPSMNPDRPTS
ECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCC
NVDFRLAIAYAADRQRIVDQVYGGAGRPNSTYLTYGSLYHDEEVGMTFGSTPDIEAAKEH
CCCEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHH
LEASGYDTSRTLKIIAVNKPSVVRAMTILQANLKAIGVTATVESQEVAGFYSALISGEYD
HHCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCEEEEEEEEECCHHHHHHHHHHHCCCEE
LIAFDSPASTSAGFAPDYVNGGLNSKAANNFAKFNDPEMDRLLDTAMTAQTEEEQAAAWK
EEEECCCCCCCCCCCCHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
AVQERDVATQGNIQLVAAQVSEAWSKDLVGYEPSGLLWLNTVLDVK
HHHHHCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure 
TSTARSRSARARAGLVAVAAAAALLLAACGGGSGGNQSDGPETTKITDLVVDSGQEPDS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
LDPFYRNTAEAQRFYRLAYSSILKWNEDGSLAPDLAAELPEVTDGGKTWTITLRDGVTFH
CCHHHHCHHHHHHHHHHHHHHHHEECCCCCCCCHHHHCCCCCCCCCCEEEEEEECCEEEE
DGTPLTADDVVFTFEAAANPENGAVWLSSLSYMESVKAVDDTTVELKLTEPYAYMGSRLA
CCCCCCCCCEEEEEEECCCCCCCEEEEHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCEE
MIPILSDETPYKTNDTYATTENGSGPYVLEKLNRGDSIEMARFGDYFGDQPPFETITFKV
EEEEECCCCCCCCCCCEEECCCCCCCHHHHCCCCCCCEEHHHHHHHCCCCCCCCEEEEEE
VPEDASRIARLLNGESHILPNVPTDQVELIKDRGANAAIVEKNVVRLFLYPSMNPDRPTS
ECCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCC
NVDFRLAIAYAADRQRIVDQVYGGAGRPNSTYLTYGSLYHDEEVGMTFGSTPDIEAAKEH
CCCEEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEECCEEECCCCCCCCCCCCCHHHHHHH
LEASGYDTSRTLKIIAVNKPSVVRAMTILQANLKAIGVTATVESQEVAGFYSALISGEYD
HHCCCCCCCCEEEEEEECCCHHHHHHHHHHHCCEEEEEEEEECCHHHHHHHHHHHCCCEE
LIAFDSPASTSAGFAPDYVNGGLNSKAANNFAKFNDPEMDRLLDTAMTAQTEEEQAAAWK
EEEECCCCCCCCCCCCHHHCCCCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHH
AVQERDVATQGNIQLVAAQVSEAWSKDLVGYEPSGLLWLNTVLDVK
HHHHHCCCCCCCEEEEEEHHHHHHHHCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]