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The map label for this gene is yabD [H]

Identifier: 119718078

GI number: 119718078

Start: 4077193

End: 4078020

Strand: Reverse

Name: yabD [H]

Synonym: Noca_3858

Alternate gene names: 119718078

Gene position: 4078020-4077193 (Counterclockwise)

Preceding gene: 119718079

Following gene: 119718077

Centisome position: 81.79

GC content: 74.52

Gene sequence:

>828_bases
ATGACCGACCGCCCACCCGCCCCGGAGCCGCTGCCACACCCGGTCGTGGACAACCACTGCCACCTCGACGTCGTGCGCGA
CGACGCAGACCCGCTCCCGGTGGACCAGGCGGTCGCCGCGGCCGCGGCGGTCGGCGTCACCCGGATCGTCCAGATCGGCT
GCGACCTGCCCGGCGCCCGCTGGGCGGTCGAGGCGGCCGCGACGTACGACGCGCTGGTCGCCGGCGTCGCCCTGCACCCC
AACGAGGCGCCGCGGCTGCCCGACCTGGACGCCGCCATGGCCGAGATCGAGCGGCTCGCGGGCGCGCACGACAAGGTGCG
CGCGGTGGGCGAGACCGGCCTGGACCACTTCCGCACCGGTGAGGAGGGGCGGGCCGTGCAGGTCGAGTCCTTCCGCCGGC
ACATCGACCTCGCCAAGCGGCTCGACAAGACCCTGGTCGTCCACGACCGCGACGCGCACGACGCGGTCCTCGACGTGATC
GACGAGGAGGGGGCGCCGGCGCGCTGGGTGATGCACTGCTTCTCCGGCGACGCCGCCTTCGCGCGTCGCTGCCTGGACCG
TGGGGCACACCTCTCCTTCGCGGGCACGGTGACCTTCAAGAACGCCCAGCCGCTGCGCGACGCGCTCGCGATCACGCCCC
TCGACCGGCTGCTGGTCGAGACCGATGCGCCGTACCTGACACCCACGCCGTACCGCGGCCGGACCAACGCCTCCTACCTC
GTCCCGCTCACGATGCGGACGATGGCGCAGGTCCGCGGCGCGGACCTGGAGACGCTCTGCGCGGCCGTCGAGGCGACCAC
CGAGGCGGCCTTCGGGGGCTCCTGGTAG

Upstream 100 bases:

>100_bases
ATGCGCCGTACGACCTGGTCGTCCTCGAGGGCGTCAGCCACTGGATCCCCACCCAGGCGCCCGAGGAGTGCGCCGCCGCG
ATCCTCGCGCGGGTGCACGG

Downstream 100 bases:

>100_bases
CCCTCTTTACCATCGAGATCCTGCTCACGCCCGGGTGAAATGTGCTTGGCTCGGTTTGCATTTCTGGCACCTTGGCTGGT
GGTCTGGAATGCGGAAGGCC

Product: TatD family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MTDRPPAPEPLPHPVVDNHCHLDVVRDDADPLPVDQAVAAAAAVGVTRIVQIGCDLPGARWAVEAAATYDALVAGVALHP
NEAPRLPDLDAAMAEIERLAGAHDKVRAVGETGLDHFRTGEEGRAVQVESFRRHIDLAKRLDKTLVVHDRDAHDAVLDVI
DEEGAPARWVMHCFSGDAAFARRCLDRGAHLSFAGTVTFKNAQPLRDALAITPLDRLLVETDAPYLTPTPYRGRTNASYL
VPLTMRTMAQVRGADLETLCAAVEATTEAAFGGSW

Sequences:

>Translated_275_residues
MTDRPPAPEPLPHPVVDNHCHLDVVRDDADPLPVDQAVAAAAAVGVTRIVQIGCDLPGARWAVEAAATYDALVAGVALHP
NEAPRLPDLDAAMAEIERLAGAHDKVRAVGETGLDHFRTGEEGRAVQVESFRRHIDLAKRLDKTLVVHDRDAHDAVLDVI
DEEGAPARWVMHCFSGDAAFARRCLDRGAHLSFAGTVTFKNAQPLRDALAITPLDRLLVETDAPYLTPTPYRGRTNASYL
VPLTMRTMAQVRGADLETLCAAVEATTEAAFGGSW
>Mature_274_residues
TDRPPAPEPLPHPVVDNHCHLDVVRDDADPLPVDQAVAAAAAVGVTRIVQIGCDLPGARWAVEAAATYDALVAGVALHPN
EAPRLPDLDAAMAEIERLAGAHDKVRAVGETGLDHFRTGEEGRAVQVESFRRHIDLAKRLDKTLVVHDRDAHDAVLDVID
EEGAPARWVMHCFSGDAAFARRCLDRGAHLSFAGTVTFKNAQPLRDALAITPLDRLLVETDAPYLTPTPYRGRTNASYLV
PLTMRTMAQVRGADLETLCAAVEATTEAAFGGSW

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349734, Length=269, Percent_Identity=27.5092936802974, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI225903424, Length=177, Percent_Identity=31.0734463276836, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI226061853, Length=277, Percent_Identity=27.0758122743682, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI110349730, Length=269, Percent_Identity=26.3940520446097, Blast_Score=73, Evalue=3e-13,
Organism=Escherichia coli, GI1787342, Length=246, Percent_Identity=39.4308943089431, Blast_Score=155, Evalue=3e-39,
Organism=Escherichia coli, GI48994985, Length=249, Percent_Identity=30.1204819277108, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI87082439, Length=228, Percent_Identity=31.140350877193, Blast_Score=94, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI71980746, Length=268, Percent_Identity=24.2537313432836, Blast_Score=80, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17559024, Length=195, Percent_Identity=27.6923076923077, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24648690, Length=200, Percent_Identity=31, Blast_Score=87, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29610; Mature: 29478

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDRPPAPEPLPHPVVDNHCHLDVVRDDADPLPVDQAVAAAAAVGVTRIVQIGCDLPGAR
CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH
WAVEAAATYDALVAGVALHPNEAPRLPDLDAAMAEIERLAGAHDKVRAVGETGLDHFRTG
HHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCHHHHCCC
EEGRAVQVESFRRHIDLAKRLDKTLVVHDRDAHDAVLDVIDEEGAPARWVMHCFSGDAAF
CCCCEEEHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHCCCHHH
ARRCLDRGAHLSFAGTVTFKNAQPLRDALAITPLDRLLVETDAPYLTPTPYRGRTNASYL
HHHHHHCCCCEEEEEEEEECCCCHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCEEE
VPLTMRTMAQVRGADLETLCAAVEATTEAAFGGSW
EHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TDRPPAPEPLPHPVVDNHCHLDVVRDDADPLPVDQAVAAAAAVGVTRIVQIGCDLPGAR
CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH
WAVEAAATYDALVAGVALHPNEAPRLPDLDAAMAEIERLAGAHDKVRAVGETGLDHFRTG
HHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCHHHHCCC
EEGRAVQVESFRRHIDLAKRLDKTLVVHDRDAHDAVLDVIDEEGAPARWVMHCFSGDAAF
CCCCEEEHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHCCCHHH
ARRCLDRGAHLSFAGTVTFKNAQPLRDALAITPLDRLLVETDAPYLTPTPYRGRTNASYL
HHHHHHCCCCEEEEEEEEECCCCHHHHHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCEEE
VPLTMRTMAQVRGADLETLCAAVEATTEAAFGGSW
EHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]