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The map label for this gene is yabE [H]

Identifier: 119718077

GI number: 119718077

Start: 4075819

End: 4076982

Strand: Reverse

Name: yabE [H]

Synonym: Noca_3857

Alternate gene names: 119718077

Gene position: 4076982-4075819 (Counterclockwise)

Preceding gene: 119718078

Following gene: 119718076

Centisome position: 81.77

GC content: 71.13

Gene sequence:

>1164_bases
GTGCCCACCAGTGAGCACAGCAATGAGCAGCAGCCCACCAGCAGCCTCCTGAGCCGGGCCGGCCGGAGCCGGCCCCTGAT
GGTCGCCCTCGCGGCGATCGTGGTCCTGGCCGTCGCCGGGAGCACCTGGGGCTACAGCGCCCTCAGCAAGACCGTGACCC
TCTCCCTCGACGGGCAGGCCCAGGAGGTCACCGCCTTCGGCGGGACCGTCGGCGACGTGTTGAAGTCGGAGGGCGTGGAG
GTCTCGGCCCGCGACGTCGTCGCCCCGAGCGTCGACGAGCCGATCGCGGACGGCACCAAGATCTCGGTGCGCTTCGCCCG
CCCGCTCGCGCTGAGCGTCGACGGCGACACCCGCACCTACTGGGTCACCTCCACCACCGTCGCGCAGGCGCTGGGCGAGA
TCGGCCGGCGGTACGGCGACGCCGAGCTGTCGGTCAGCCGCGGCGGCTCGATCGATCGCGGCGGCATGAGCCTGGCGGTG
GTGACGCCGAAGACCCTGAAGGTCAAGCTCGGCAAGCACCAGATGGTCAAGCGGACCGTCACCGCGCTCACCGTCGAGGA
CGCCCTGGCGAAGCTCGGGGTGAAGCTCGGCAAGCACGACGAGACGAAGCCCGCCCCCGGGCACGAGCTGCAGGACGGCG
ACCGGCTGGTCTTCACCAACGTCAGGATCGTGACCAAGCACGTCGACGGCGAGGTCGTCGACTTCGGCACCGTCGAACAG
GAGGACGGGTCGATGGTCCAGGGCCAGACCTCGGTCGTGCGGGAGGGTGAGACCGGCCTGCGCGACGTGACCTACCGGAT
CGTCTACCGCAACGGCGAGGTCTCGGTGCGCAAGGTCCTGCGCCAAGACGTGCTGCGCCAGCCGGTCGACGAGATCGTCA
AGGTCGGCACCAAGGCGCCGGCGGTCAACTTCGCGTCCGGCAACAGCGTGTGGGACCGGCTCGCCCAGTGCGAGTCCGGC
GGCAACTGGGCGATCAACACCGGCAACGGCTACTACGGCGGCCTCCAGTTCAGCCTCGGCACCTGGCAGGCGTACGGCGG
CACCGGCCTGCCCAGCAACCACAGCCGCGAGACGCAGATCGCCATCGCCACCAAGCTCCGCAACGCCTCCGGCGGCTATG
GCGCTTGGCCGGGCTGCGCCGCGGCGCTCGGGCTGCCCCGCTGA

Upstream 100 bases:

>100_bases
CGGATCAGGACAGGTCCAGCAAGGACCAGCGCGGGTGTGGGGAACACGTCGGGACCGCGCTGGCAGCCCGAGGCCCGGGT
CGTACGACGTTCGGAGAATC

Downstream 100 bases:

>100_bases
CGTCACCGGAGCCCGCCGCGAAGCGCGCGGGGTCGCGCTGACTACGCTGGCGCCCATGTCTGACACCTCCGCCGGCCCCA
GGTTGCTGGGGCCGGCGGAC

Product: transglycosylase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 386

Protein sequence:

>387_residues
MPTSEHSNEQQPTSSLLSRAGRSRPLMVALAAIVVLAVAGSTWGYSALSKTVTLSLDGQAQEVTAFGGTVGDVLKSEGVE
VSARDVVAPSVDEPIADGTKISVRFARPLALSVDGDTRTYWVTSTTVAQALGEIGRRYGDAELSVSRGGSIDRGGMSLAV
VTPKTLKVKLGKHQMVKRTVTALTVEDALAKLGVKLGKHDETKPAPGHELQDGDRLVFTNVRIVTKHVDGEVVDFGTVEQ
EDGSMVQGQTSVVREGETGLRDVTYRIVYRNGEVSVRKVLRQDVLRQPVDEIVKVGTKAPAVNFASGNSVWDRLAQCESG
GNWAINTGNGYYGGLQFSLGTWQAYGGTGLPSNHSRETQIAIATKLRNASGGYGAWPGCAAALGLPR

Sequences:

>Translated_387_residues
MPTSEHSNEQQPTSSLLSRAGRSRPLMVALAAIVVLAVAGSTWGYSALSKTVTLSLDGQAQEVTAFGGTVGDVLKSEGVE
VSARDVVAPSVDEPIADGTKISVRFARPLALSVDGDTRTYWVTSTTVAQALGEIGRRYGDAELSVSRGGSIDRGGMSLAV
VTPKTLKVKLGKHQMVKRTVTALTVEDALAKLGVKLGKHDETKPAPGHELQDGDRLVFTNVRIVTKHVDGEVVDFGTVEQ
EDGSMVQGQTSVVREGETGLRDVTYRIVYRNGEVSVRKVLRQDVLRQPVDEIVKVGTKAPAVNFASGNSVWDRLAQCESG
GNWAINTGNGYYGGLQFSLGTWQAYGGTGLPSNHSRETQIAIATKLRNASGGYGAWPGCAAALGLPR
>Mature_386_residues
PTSEHSNEQQPTSSLLSRAGRSRPLMVALAAIVVLAVAGSTWGYSALSKTVTLSLDGQAQEVTAFGGTVGDVLKSEGVEV
SARDVVAPSVDEPIADGTKISVRFARPLALSVDGDTRTYWVTSTTVAQALGEIGRRYGDAELSVSRGGSIDRGGMSLAVV
TPKTLKVKLGKHQMVKRTVTALTVEDALAKLGVKLGKHDETKPAPGHELQDGDRLVFTNVRIVTKHVDGEVVDFGTVEQE
DGSMVQGQTSVVREGETGLRDVTYRIVYRNGEVSVRKVLRQDVLRQPVDEIVKVGTKAPAVNFASGNSVWDRLAQCESGG
NWAINTGNGYYGGLQFSLGTWQAYGGTGLPSNHSRETQIAIATKLRNASGGYGAWPGCAAALGLPR

Specific function: Unknown

COG id: COG3583

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G5 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR007137
- InterPro:   IPR011098 [H]

Pfam domain/function: PF06725 3D; PF03990 DUF348; PF07501 G5 [H]

EC number: NA

Molecular weight: Translated: 40976; Mature: 40844

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS51109 G5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTSEHSNEQQPTSSLLSRAGRSRPLMVALAAIVVLAVAGSTWGYSALSKTVTLSLDGQA
CCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCEEEEEEECCCC
QEVTAFGGTVGDVLKSEGVEVSARDVVAPSVDEPIADGTKISVRFARPLALSVDGDTRTY
EEEEECCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCEEE
WVTSTTVAQALGEIGRRYGDAELSVSRGGSIDRGGMSLAVVTPKTLKVKLGKHQMVKRTV
EEEHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCEEEEECCHHHHHHHHH
TALTVEDALAKLGVKLGKHDETKPAPGHELQDGDRLVFTNVRIVTKHVDGEVVDFGTVEQ
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEECCCEEC
EDGSMVQGQTSVVREGETGLRDVTYRIVYRNGEVSVRKVLRQDVLRQPVDEIVKVGTKAP
CCCCEECCCHHHHHCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCHHHHHHHCCCCCC
AVNFASGNSVWDRLAQCESGGNWAINTGNGYYGGLQFSLGTWQAYGGTGLPSNHSRETQI
EEEECCCCHHHHHHHHHCCCCCEEEECCCCEECEEEEEECCEEECCCCCCCCCCCCCEEE
AIATKLRNASGGYGAWPGCAAALGLPR
EEEEEECCCCCCCCCCCHHHHHCCCCC
>Mature Secondary Structure 
PTSEHSNEQQPTSSLLSRAGRSRPLMVALAAIVVLAVAGSTWGYSALSKTVTLSLDGQA
CCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCHHHHCEEEEEEECCCC
QEVTAFGGTVGDVLKSEGVEVSARDVVAPSVDEPIADGTKISVRFARPLALSVDGDTRTY
EEEEECCCHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCEEE
WVTSTTVAQALGEIGRRYGDAELSVSRGGSIDRGGMSLAVVTPKTLKVKLGKHQMVKRTV
EEEHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCEEEEECCHHHHHHHHH
TALTVEDALAKLGVKLGKHDETKPAPGHELQDGDRLVFTNVRIVTKHVDGEVVDFGTVEQ
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEECCCEEC
EDGSMVQGQTSVVREGETGLRDVTYRIVYRNGEVSVRKVLRQDVLRQPVDEIVKVGTKAP
CCCCEECCCHHHHHCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHCHHHHHHHCCCCCC
AVNFASGNSVWDRLAQCESGGNWAINTGNGYYGGLQFSLGTWQAYGGTGLPSNHSRETQI
EEEECCCCHHHHHHHHHCCCCCEEEECCCCEECEEEEEECCEEECCCCCCCCCCCCCEEE
AIATKLRNASGGYGAWPGCAAALGLPR
EEEEEECCCCCCCCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]