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The map label for this gene is yfhM [H]

Identifier: 119718079

GI number: 119718079

Start: 4078017

End: 4078853

Strand: Reverse

Name: yfhM [H]

Synonym: Noca_3859

Alternate gene names: 119718079

Gene position: 4078853-4078017 (Counterclockwise)

Preceding gene: 119718080

Following gene: 119718078

Centisome position: 81.81

GC content: 74.67

Gene sequence:

>837_bases
ATGAACGCACGGATCACCCGGCTGCAGCACGACGGCCTCACCTTCGACGTCCTCGACGAGGGGCCGCTGGACGGGACGCC
CGTCGTGCTGCTGCACGGGTTCCCCGAACGCAGCACGACCTGGCGGGGGGTCGCCCCGATCCTGCACGAGGCGGGGCTGC
GCACCTACGCACCGGACCAGCGCGGCTACTCACCGGGCGCGCGGCCGCGGGCCCGGTGGAGCTACCGGCTCCCGCTCCTG
GTCGGCGACGTCGCCGCGCTGATCGAACGCATCGGCGGGCCCGTCCACCTGGTCGGGCACGACTGGGGTGCCGCGGTCGG
CTGGGCCGTCGCCGGACGGCTCCCGGAGCAGGTCCGCACCTACACCGCGGTGTCGGTGCCGCACCCCGCCGCGTTCGCCC
GCGCGATGAGGAGCCGGAGCCAGCGCCGGCGGTCGGGCTACATGGCGATGTTCAACCTCCCGGTGCTCCCCGAGCTGATG
GCGCGGACGCCCGGCGGCCGCTTCGACCAGGCGATGCGCAAGGCCGGGATGACCGCCGAGGAGGTCACCCGGTTCCGCAC
CGAGATCGTCGAGTACGGCGCGCTGCACCACGCGCTGGGCTGGTACCGCGCGCTGCCGTTCACCCGCCCGGGCAGCGCCG
ACGTCACGGTCACGGTCCCGACCACGCTGGTGTGGAGCGACCGGGACATCGCGATCGGCCGCGAGGCGGTCGAGGGCACC
CCGCGCTGGGTGGATGCGCCGTACGACCTGGTCGTCCTCGAGGGCGTCAGCCACTGGATCCCCACCCAGGCGCCCGAGGA
GTGCGCCGCCGCGATCCTCGCGCGGGTGCACGGATGA

Upstream 100 bases:

>100_bases
GCAAGGAGGCGATCGTCGTGGTCGCCCGCCGCGCCGGCGTACCGAAGCGCGAGGTCTACAACCTGGTTCACGACCGGGAC
CACGGGGCACAGGAGTGAGC

Downstream 100 bases:

>100_bases
CCGACCGCCCACCCGCCCCGGAGCCGCTGCCACACCCGGTCGTGGACAACCACTGCCACCTCGACGTCGTGCGCGACGAC
GCAGACCCGCTCCCGGTGGA

Product: alpha/beta hydrolase fold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MNARITRLQHDGLTFDVLDEGPLDGTPVVLLHGFPERSTTWRGVAPILHEAGLRTYAPDQRGYSPGARPRARWSYRLPLL
VGDVAALIERIGGPVHLVGHDWGAAVGWAVAGRLPEQVRTYTAVSVPHPAAFARAMRSRSQRRRSGYMAMFNLPVLPELM
ARTPGGRFDQAMRKAGMTAEEVTRFRTEIVEYGALHHALGWYRALPFTRPGSADVTVTVPTTLVWSDRDIAIGREAVEGT
PRWVDAPYDLVVLEGVSHWIPTQAPEECAAAILARVHG

Sequences:

>Translated_278_residues
MNARITRLQHDGLTFDVLDEGPLDGTPVVLLHGFPERSTTWRGVAPILHEAGLRTYAPDQRGYSPGARPRARWSYRLPLL
VGDVAALIERIGGPVHLVGHDWGAAVGWAVAGRLPEQVRTYTAVSVPHPAAFARAMRSRSQRRRSGYMAMFNLPVLPELM
ARTPGGRFDQAMRKAGMTAEEVTRFRTEIVEYGALHHALGWYRALPFTRPGSADVTVTVPTTLVWSDRDIAIGREAVEGT
PRWVDAPYDLVVLEGVSHWIPTQAPEECAAAILARVHG
>Mature_278_residues
MNARITRLQHDGLTFDVLDEGPLDGTPVVLLHGFPERSTTWRGVAPILHEAGLRTYAPDQRGYSPGARPRARWSYRLPLL
VGDVAALIERIGGPVHLVGHDWGAAVGWAVAGRLPEQVRTYTAVSVPHPAAFARAMRSRSQRRRSGYMAMFNLPVLPELM
ARTPGGRFDQAMRKAGMTAEEVTRFRTEIVEYGALHHALGWYRALPFTRPGSADVTVTVPTTLVWSDRDIAIGREAVEGT
PRWVDAPYDLVVLEGVSHWIPTQAPEECAAAILARVHG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Epoxide hydrolase family [H]

Homologues:

Organism=Homo sapiens, GI218777837, Length=273, Percent_Identity=27.8388278388278, Blast_Score=120, Evalue=1e-27,
Organism=Homo sapiens, GI218777840, Length=272, Percent_Identity=30.5147058823529, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI13376164, Length=272, Percent_Identity=30.5147058823529, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI27597073, Length=284, Percent_Identity=22.887323943662, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17554012, Length=256, Percent_Identity=27.734375, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17562298, Length=279, Percent_Identity=29.0322580645161, Blast_Score=108, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 30620; Mature: 30620

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNARITRLQHDGLTFDVLDEGPLDGTPVVLLHGFPERSTTWRGVAPILHEAGLRTYAPDQ
CCCEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCC
RGYSPGARPRARWSYRLPLLVGDVAALIERIGGPVHLVGHDWGAAVGWAVAGRLPEQVRT
CCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCHHHHHH
YTAVSVPHPAAFARAMRSRSQRRRSGYMAMFNLPVLPELMARTPGGRFDQAMRKAGMTAE
HHEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHCCCCCHHHHHHHHHCCCHH
EVTRFRTEIVEYGALHHALGWYRALPFTRPGSADVTVTVPTTLVWSDRDIAIGREAVEGT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECEEEEECCCCCCCCHHHHCCC
PRWVDAPYDLVVLEGVSHWIPTQAPEECAAAILARVHG
CCEECCCCCEEEECCHHHCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MNARITRLQHDGLTFDVLDEGPLDGTPVVLLHGFPERSTTWRGVAPILHEAGLRTYAPDQ
CCCEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCC
RGYSPGARPRARWSYRLPLLVGDVAALIERIGGPVHLVGHDWGAAVGWAVAGRLPEQVRT
CCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCHHHHHH
YTAVSVPHPAAFARAMRSRSQRRRSGYMAMFNLPVLPELMARTPGGRFDQAMRKAGMTAE
HHEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHCCCCCHHHHHHHHHCCCHH
EVTRFRTEIVEYGALHHALGWYRALPFTRPGSADVTVTVPTTLVWSDRDIAIGREAVEGT
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECEEEEECCCCCCCCHHHHCCC
PRWVDAPYDLVVLEGVSHWIPTQAPEECAAAILARVHG
CCEECCCCCEEEECCHHHCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8946165; 9384377 [H]