Definition Nocardioides sp. JS614 chromosome, complete genome.
Accession NC_008699
Length 4,985,871

Click here to switch to the map view.

The map label for this gene is 119717045

Identifier: 119717045

GI number: 119717045

Start: 2990635

End: 2991849

Strand: Reverse

Name: 119717045

Synonym: Noca_2821

Alternate gene names: NA

Gene position: 2991849-2990635 (Counterclockwise)

Preceding gene: 119717046

Following gene: 119717044

Centisome position: 60.01

GC content: 71.77

Gene sequence:

>1215_bases
GTGATCACCGGGTTGTGGAGCCGGGTCAACGGCCGCGCGCTCGCGGTCGCGGCCGCTGTCGTGCTGCTGGCGGCGACGTA
CTTCATCGTGCTGCGCGACGACACCGCGACCAAGACCGTGAGCGCCCACTTCCCGCGGGCGGTCAGCATCTACGAGGGCA
GCGACGTGCGGATCCTCGGCGTGAACGTCGGCCGGGTGACCGCGGTGACGCCGGAGGGCAACTCCGTGCGCGTGGACATG
GAGTACGACGCGGAGTACCAGGTGCCGGCCGACGCCCAGGCCGTGATCGTGACTCCGACCCTGGTCGCGGACCGGTTCGT
CCAGCTCACGCCGGCCTACGCCGAGGGCGACCGGGTGCTGGCCGACGGCGCGGACATCGCGCTGCCCGACACCGGTGTCC
CGGTCGAGCTGGACCGGATCTACGCGAGCCTGCGCGACCTCTCCGAGGCCCTCGGCCCCAACGGCGTCAACAAGGACGGC
ACCCTCGACCATCTGCTCGAGGCCGGGGCGCACGCGTTGGACGGCAGGGGCGCGCTCGGCAACCGGATGCTCACCCGGCT
CGCCGCGGCCGCGCGGACGTTCGGCGAGGGAGCGGGTCCGCTGTTCGACACCGTCAGCCGGCTCGCCGAGTTCACCACCA
CGCTCGCGGAGAACGGCAAGTTCGTCCGGGCGTTCATCAAGGACCTCGCCGGCGTCTCGTCCCAGCTCGCGGACGAGCGA
ACCGAGATCCAGGGAGCGCTCGCGGCGGTCGCGGACGCGGTCGGGACCGTGAAGTCGTTCGTGCACGACAACCGTGCGGC
GCTGGTCGCGGACGTCGAGCGACTCACCCGGGTGATGAAGACCATCGCCTCCGAGAAGGACAGCATCGACACCGCGCTGC
GCGTCGCGCCCGTAGCCATCGGCAACCTCAGCCTGGCCTACAACAGCAGGTCCGGGACGATCGGCTCCCGCATCGGCATC
AGCGGCAACGTGTGGGACGCCGACGGCTTCCTGTGCGCCGTGGTCCAGCAGTCCAGCCTCTCGCGGGCCAGCAAGGACCT
GGCGTGCACGCTGTTCAAGCAGCTTCTCGAGCCGGTCGAGGGCCAGGTGCCGACCATCCCGCCCGGGCCCGACGGCCGGT
CGTCGACGGGCGATCAGGTGCCGCGCCAGGTGCAGCGTCAGTACGCCGGAGCCGGCGGCGGGTCGCTCGGCCAGCTGATG
GGGGGCGGCTCGTGA

Upstream 100 bases:

>100_bases
TCGGCAACATCATCGGGACCGGTCCCTGGTTCGACGCCTACGCGTCGAACCTCGCCGCGATCCCGACCGGAGAGTTCGTG
CCCGGACCCCTGGAGGGCCA

Downstream 100 bases:

>100_bases
TCCGCCTGCTGCGCAGCGGGGTGCTCCTCGTGGTGCTCGCCCTCCTCGCGGGTGCGTGCAAGTTCGACGGCGCCTACGAC
CTGCCGCTGCCGGGCTCGCC

Product: virulence factor Mce family protein

Products: NA

Alternate protein names: Mce Family Protein; MCE-Family D; Secreted Protein; MCE Family Protein; Mce Family D; MCE-Family Protein; Virulence Factor MCE-Like Protein; Mammalian Cell Entry Related Domain Protein; Mce-Related Protein; MCE-Family

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MITGLWSRVNGRALAVAAAVVLLAATYFIVLRDDTATKTVSAHFPRAVSIYEGSDVRILGVNVGRVTAVTPEGNSVRVDM
EYDAEYQVPADAQAVIVTPTLVADRFVQLTPAYAEGDRVLADGADIALPDTGVPVELDRIYASLRDLSEALGPNGVNKDG
TLDHLLEAGAHALDGRGALGNRMLTRLAAAARTFGEGAGPLFDTVSRLAEFTTTLAENGKFVRAFIKDLAGVSSQLADER
TEIQGALAAVADAVGTVKSFVHDNRAALVADVERLTRVMKTIASEKDSIDTALRVAPVAIGNLSLAYNSRSGTIGSRIGI
SGNVWDADGFLCAVVQQSSLSRASKDLACTLFKQLLEPVEGQVPTIPPGPDGRSSTGDQVPRQVQRQYAGAGGGSLGQLM
GGGS

Sequences:

>Translated_404_residues
MITGLWSRVNGRALAVAAAVVLLAATYFIVLRDDTATKTVSAHFPRAVSIYEGSDVRILGVNVGRVTAVTPEGNSVRVDM
EYDAEYQVPADAQAVIVTPTLVADRFVQLTPAYAEGDRVLADGADIALPDTGVPVELDRIYASLRDLSEALGPNGVNKDG
TLDHLLEAGAHALDGRGALGNRMLTRLAAAARTFGEGAGPLFDTVSRLAEFTTTLAENGKFVRAFIKDLAGVSSQLADER
TEIQGALAAVADAVGTVKSFVHDNRAALVADVERLTRVMKTIASEKDSIDTALRVAPVAIGNLSLAYNSRSGTIGSRIGI
SGNVWDADGFLCAVVQQSSLSRASKDLACTLFKQLLEPVEGQVPTIPPGPDGRSSTGDQVPRQVQRQYAGAGGGSLGQLM
GGGS
>Mature_404_residues
MITGLWSRVNGRALAVAAAVVLLAATYFIVLRDDTATKTVSAHFPRAVSIYEGSDVRILGVNVGRVTAVTPEGNSVRVDM
EYDAEYQVPADAQAVIVTPTLVADRFVQLTPAYAEGDRVLADGADIALPDTGVPVELDRIYASLRDLSEALGPNGVNKDG
TLDHLLEAGAHALDGRGALGNRMLTRLAAAARTFGEGAGPLFDTVSRLAEFTTTLAENGKFVRAFIKDLAGVSSQLADER
TEIQGALAAVADAVGTVKSFVHDNRAALVADVERLTRVMKTIASEKDSIDTALRVAPVAIGNLSLAYNSRSGTIGSRIGI
SGNVWDADGFLCAVVQQSSLSRASKDLACTLFKQLLEPVEGQVPTIPPGPDGRSSTGDQVPRQVQRQYAGAGGGSLGQLM
GGGS

Specific function: Unknown

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42202; Mature: 42202

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITGLWSRVNGRALAVAAAVVLLAATYFIVLRDDTATKTVSAHFPRAVSIYEGSDVRILG
CCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHCCCCEEEEEECCCEEEEE
VNVGRVTAVTPEGNSVRVDMEYDAEYQVPADAQAVIVTPTLVADRFVQLTPAYAEGDRVL
EECCEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEE
ADGADIALPDTGVPVELDRIYASLRDLSEALGPNGVNKDGTLDHLLEAGAHALDGRGALG
ECCCCEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCHH
NRMLTRLAAAARTFGEGAGPLFDTVSRLAEFTTTLAENGKFVRAFIKDLAGVSSQLADER
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
TEIQGALAAVADAVGTVKSFVHDNRAALVADVERLTRVMKTIASEKDSIDTALRVAPVAI
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEE
GNLSLAYNSRSGTIGSRIGISGNVWDADGFLCAVVQQSSLSRASKDLACTLFKQLLEPVE
CCEEEEECCCCCCCCCCCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC
GQVPTIPPGPDGRSSTGDQVPRQVQRQYAGAGGGSLGQLMGGGS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC
>Mature Secondary Structure
MITGLWSRVNGRALAVAAAVVLLAATYFIVLRDDTATKTVSAHFPRAVSIYEGSDVRILG
CCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHCCCCEEEEEECCCEEEEE
VNVGRVTAVTPEGNSVRVDMEYDAEYQVPADAQAVIVTPTLVADRFVQLTPAYAEGDRVL
EECCEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCEEE
ADGADIALPDTGVPVELDRIYASLRDLSEALGPNGVNKDGTLDHLLEAGAHALDGRGALG
ECCCCEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCHH
NRMLTRLAAAARTFGEGAGPLFDTVSRLAEFTTTLAENGKFVRAFIKDLAGVSSQLADER
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
TEIQGALAAVADAVGTVKSFVHDNRAALVADVERLTRVMKTIASEKDSIDTALRVAPVAI
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHEEE
GNLSLAYNSRSGTIGSRIGISGNVWDADGFLCAVVQQSSLSRASKDLACTLFKQLLEPVE
CCEEEEECCCCCCCCCCCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHC
GQVPTIPPGPDGRSSTGDQVPRQVQRQYAGAGGGSLGQLMGGGS
CCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA